Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G476700.1 | Wheat | nucleus | 98.03 | 97.71 |
| TraesCS5A01G464900.1 | Wheat | nucleus | 96.72 | 95.78 |
| HORVU5Hr1G111130.2 | Barley | cytosol, nucleus | 90.82 | 81.95 |
| Zm00001d034558_P001 | Maize | nucleus | 65.9 | 77.31 |
| Os03t0808300-01 | Rice | plasma membrane | 69.18 | 74.3 |
| Solyc10g080240.1.1 | Tomato | cytosol | 11.48 | 70.0 |
| OQU90788 | Sorghum | nucleus | 66.89 | 69.86 |
| GSMUA_Achr6P00160_001 | Banana | nucleus | 47.54 | 53.51 |
| GSMUA_Achr4P33120_001 | Banana | nucleus | 46.89 | 52.57 |
| GSMUA_Achr2P13770_001 | Banana | cytosol, nucleus, plastid | 47.54 | 51.79 |
| TraesCS2D01G206900.1 | Wheat | cytosol, plastid | 52.13 | 51.46 |
| VIT_08s0007g08280.t01 | Wine grape | nucleus | 44.26 | 49.82 |
| TraesCS7D01G432700.1 | Wheat | nucleus | 43.61 | 48.01 |
| KRG95278 | Soybean | nucleus | 41.97 | 47.23 |
| AT2G41870.1 | Thale cress | nucleus | 41.31 | 45.99 |
| Solyc10g080230.1.1 | Tomato | cytosol | 23.28 | 44.94 |
| Bra004657.1-P | Field mustard | cytosol | 39.34 | 44.44 |
| CDX79905 | Canola | nucleus | 39.02 | 44.24 |
| KRH71974 | Soybean | nucleus | 43.28 | 44.15 |
| CDY48774 | Canola | nucleus | 39.02 | 44.07 |
| PGSC0003DMT400060978 | Potato | nucleus | 42.3 | 44.03 |
| Solyc04g015520.2.1 | Tomato | nucleus | 43.28 | 43.56 |
| KRH33097 | Soybean | nucleus | 41.97 | 43.24 |
| CDX72021 | Canola | nucleus | 38.36 | 43.01 |
| PGSC0003DMT400070037 | Potato | nucleus | 44.26 | 42.59 |
| CDY06095 | Canola | nucleus | 40.33 | 41.98 |
| Bra007335.1-P | Field mustard | nucleus | 40.33 | 41.98 |
| AT3G57540.1 | Thale cress | nucleus | 38.69 | 39.86 |
| KRH66963 | Soybean | nucleus | 27.54 | 37.33 |
| TraesCS4D01G075000.1 | Wheat | nucleus | 22.3 | 19.26 |
| TraesCS4D01G343800.1 | Wheat | nucleus | 20.98 | 15.17 |
| TraesCS6D01G053500.1 | Wheat | nucleus | 23.61 | 14.15 |
| TraesCS2D01G343900.1 | Wheat | plastid | 17.05 | 12.53 |
| TraesCS5D01G047600.3 | Wheat | cytosol | 15.74 | 10.71 |
| TraesCS2D01G464900.1 | Wheat | nucleus, plastid | 18.36 | 10.59 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G477500.1 | EnsemblPlantsGene:TraesCS5D01G477500 | InterPro:Remorin_C | ncoils:Coil | PANTHER:PTHR31471 | PANTHER:PTHR31471:SF7 |
| PFAM:PF03763 | SEG:seg | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr5D:+:516785828..516787608
Molecular Weight (calculated)
32915.0 Da
IEP (calculated)
5.457
GRAVY (calculated)
-0.741
Length
305 amino acids
Sequence
(BLAST)
(BLAST)
001: MLHERHAPPS ASDDEDDAPG PNDEEGTLVT STTNTTFHDV DEVIEVREVH PLSPPPQHPP FTPPTRTVSA ASTAWDSASS HRSVTSEEQF MTMSREFTAM
101: VAAGAGAGAA NNANSNNSNS NHPGGPYDGG ADQLTSIGED ELEEHNPLAI VPDSGRPFAT PPSRSGGGSG RAARLDLEVV PAAGPPVEAS QVKKEEVETK
201: VSAWQTAEIA KINNRFKREE VVINGWETEQ VDKASAWLKK IERKLDEQRA KAVEKTQNDV AKARHKAEEK RASAEAKRGL KLAKVLELAN FMKAVGRVPT
301: KRSFF
101: VAAGAGAGAA NNANSNNSNS NHPGGPYDGG ADQLTSIGED ELEEHNPLAI VPDSGRPFAT PPSRSGGGSG RAARLDLEVV PAAGPPVEAS QVKKEEVETK
201: VSAWQTAEIA KINNRFKREE VVINGWETEQ VDKASAWLKK IERKLDEQRA KAVEKTQNDV AKARHKAEEK RASAEAKRGL KLAKVLELAN FMKAVGRVPT
301: KRSFF
001: MLTLYHQERS PDATSNDRDE TPETVVREVH ALTPAPEDNS RTMTATLPPP PAFRGYFSPP RSATTMSEGE NFTTISREFN ALVIAGSSME NNELMTRDVT
101: QREDERQDEL MRIHEDTDHE EETNPLAIVP DQYPGSGLDP GSDNGPGQSR VGSTVQRVKR EEVEAKITAW QTAKLAKINN RFKREDAVIN GWFNEQVNKA
201: NSWMKKIERK LEERKAKAME KTQNNVAKAQ RKAEERRATA EAKRGTEVAK VVEVANLMRA LGRPPAKRSF FSFS
101: QREDERQDEL MRIHEDTDHE EETNPLAIVP DQYPGSGLDP GSDNGPGQSR VGSTVQRVKR EEVEAKITAW QTAKLAKINN RFKREDAVIN GWFNEQVNKA
201: NSWMKKIERK LEERKAKAME KTQNNVAKAQ RKAEERRATA EAKRGTEVAK VVEVANLMRA LGRPPAKRSF FSFS
Arabidopsis Description
Putative DNA binding protein [Source:UniProtKB/TrEMBL;Acc:P93758]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.