Subcellular Localization
min:
: max
Winner_takes_all: nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU6Hr1G075650.1 | |
| HORVU7Hr1G038130.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G57540.1 | HORVU6Hr1G075650.1 | AT3G47620.1 | 21798944 |
| AT3G57540.1 | HORVU7Hr1G038130.1 | AT3G47620.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G464900.1 | Wheat | nucleus | 82.84 | 90.91 |
| TraesCS5D01G477500.1 | Wheat | nucleus | 81.95 | 90.82 |
| TraesCS5B01G476700.1 | Wheat | nucleus | 81.95 | 90.52 |
| HORVU5Hr1G111120.3 | Barley | cytosol | 82.25 | 89.68 |
| Zm00001d034558_P001 | Maize | nucleus | 57.99 | 75.38 |
| Os03t0808300-01 | Rice | plasma membrane | 61.54 | 73.24 |
| Solyc10g080240.1.1 | Tomato | cytosol | 10.36 | 70.0 |
| OQU90788 | Sorghum | nucleus | 59.17 | 68.49 |
| HORVU2Hr1G039030.1 | Barley | cytosol, nucleus | 42.31 | 56.3 |
| GSMUA_Achr6P00160_001 | Banana | nucleus | 42.31 | 52.77 |
| GSMUA_Achr4P33120_001 | Banana | nucleus | 42.01 | 52.21 |
| GSMUA_Achr2P13770_001 | Banana | cytosol, nucleus, plastid | 42.9 | 51.79 |
| HORVU7Hr1G100790.1 | Barley | nucleus | 40.24 | 48.92 |
| VIT_08s0007g08280.t01 | Wine grape | nucleus | 39.05 | 48.71 |
| KRG95278 | Soybean | nucleus | 38.46 | 47.97 |
| AT2G41870.1 | Thale cress | nucleus | 38.17 | 47.08 |
| Bra004657.1-P | Field mustard | cytosol | 36.69 | 45.93 |
| CDX79905 | Canola | nucleus | 36.39 | 45.72 |
| Solyc10g080230.1.1 | Tomato | cytosol | 21.3 | 45.57 |
| CDY48774 | Canola | nucleus | 36.39 | 45.56 |
| KRH71974 | Soybean | nucleus | 39.65 | 44.82 |
| Solyc04g015520.2.1 | Tomato | nucleus | 39.65 | 44.22 |
| KRH33097 | Soybean | nucleus | 38.17 | 43.58 |
| CDX72021 | Canola | nucleus | 34.91 | 43.38 |
| PGSC0003DMT400060978 | Potato | nucleus | 37.57 | 43.34 |
| PGSC0003DMT400070037 | Potato | nucleus | 40.24 | 42.9 |
| Bra007335.1-P | Field mustard | nucleus | 36.69 | 42.32 |
| CDY06095 | Canola | nucleus | 36.69 | 42.32 |
| AT3G57540.1 | Thale cress | nucleus | 35.21 | 40.2 |
| KRH66963 | Soybean | nucleus | 25.15 | 37.78 |
| HORVU4Hr1G012760.3 | Barley | nucleus | 20.41 | 19.66 |
| HORVU0Hr1G040310.2 | Barley | cytosol, mitochondrion, nucleus | 21.01 | 13.81 |
| HORVU4Hr1G085140.6 | Barley | nucleus, plastid | 18.93 | 13.25 |
| HORVU2Hr1G084090.2 | Barley | plastid | 15.68 | 12.68 |
| HORVU2Hr1G103570.7 | Barley | nucleus, plastid | 15.68 | 10.0 |
| HORVU5Hr1G009780.6 | Barley | cytosol | 13.61 | 9.5 |
Protein Annotations
| EnsemblPlants:HORVU5Hr1G111130.2 | EnsemblPlantsGene:HORVU5Hr1G111130 | InterPro:Remorin_C | ncoils:Coil | PANTHER:PTHR31471 | PANTHER:PTHR31471:SF7 |
| PFAM:PF03763 | SEG:seg | UniParc:UPI000B48848D | UniProt:A0A287SQH3 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chrchr5H:-:635426387..635428560
Molecular Weight (calculated)
36117.8 Da
IEP (calculated)
6.254
GRAVY (calculated)
-0.696
Length
338 amino acids
Sequence
(BLAST)
(BLAST)
001: TRTTTPRTDA ARSVSQEGEA CTAGPPLPAH GAPSPPAGAD DDDASRRTCC MSGALTLVTT TAASTTNTDF HDVDEVIEVR EVHPLSPPHP PFTPPTRTVS
101: AASTAWDSAS SHRSVTSEEQ FMTMSREFTA MVAAGAGAGA TNNNNNNNPN NSNHNPGGPY DGGPDQLTSI GEDELEEHNP LAIVPDSGHP FATPPSRSGG
201: SSGRAARLDL EVVPAAGPPV EASQVKKEEV ETKVSAWQTA EIAKINNRFK REEVVINGWE TEQVDKASAW LKKIERKLDE QRAKAVEKTQ NDVAKARHKA
301: EEKRASAEAK RGLKLAKVLE LANFMKAVGR VPTKRSFF
101: AASTAWDSAS SHRSVTSEEQ FMTMSREFTA MVAAGAGAGA TNNNNNNNPN NSNHNPGGPY DGGPDQLTSI GEDELEEHNP LAIVPDSGHP FATPPSRSGG
201: SSGRAARLDL EVVPAAGPPV EASQVKKEEV ETKVSAWQTA EIAKINNRFK REEVVINGWE TEQVDKASAW LKKIERKLDE QRAKAVEKTQ NDVAKARHKA
301: EEKRASAEAK RGLKLAKVLE LANFMKAVGR VPTKRSFF
001: MLTLYHQERS PDATSNDRDE TPETVVREVH ALTPAPEDNS RTMTATLPPP PAFRGYFSPP RSATTMSEGE NFTTISREFN ALVIAGSSME NNELMTRDVT
101: QREDERQDEL MRIHEDTDHE EETNPLAIVP DQYPGSGLDP GSDNGPGQSR VGSTVQRVKR EEVEAKITAW QTAKLAKINN RFKREDAVIN GWFNEQVNKA
201: NSWMKKIERK LEERKAKAME KTQNNVAKAQ RKAEERRATA EAKRGTEVAK VVEVANLMRA LGRPPAKRSF FSFS
101: QREDERQDEL MRIHEDTDHE EETNPLAIVP DQYPGSGLDP GSDNGPGQSR VGSTVQRVKR EEVEAKITAW QTAKLAKINN RFKREDAVIN GWFNEQVNKA
201: NSWMKKIERK LEERKAKAME KTQNNVAKAQ RKAEERRATA EAKRGTEVAK VVEVANLMRA LGRPPAKRSF FSFS
Arabidopsis Description
Putative DNA binding protein [Source:UniProtKB/TrEMBL;Acc:P93758]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.