Factsheet for Bra007335.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
extracellular 1
cytosol 1
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra018126.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G57540.1	Bra018126.1-P	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06095	Canola	nucleus	98.63	98.63
CDX72021	Canola	nucleus	91.13	98.16
AT3G57540.1	Thale cress	nucleus	81.57	80.74
Solyc10g080240.1.1	Tomato	cytosol	12.63	74.0
Bra004657.1-P	Field mustard	cytosol	63.14	68.52
KRG95278	Soybean	nucleus	48.46	52.4
VIT_08s0007g08280.t01	Wine grape	nucleus	47.1	50.92
GSMUA_Achr6P00160_001	Banana	nucleus	44.71	48.34
KRH33097	Soybean	nucleus	47.78	47.3
HORVU2Hr1G039030.1	Barley	cytosol, nucleus	40.96	47.24
GSMUA_Achr4P33120_001	Banana	nucleus	43.69	47.06
KRH71974	Soybean	nucleus	47.44	46.49
Zm00001d006626_P001	Maize	nucleus	41.3	46.36
Solyc10g080230.1.1	Tomato	cytosol	24.91	46.2
Zm00001d034558_P001	Maize	nucleus	40.96	46.15
Solyc04g015520.2.1	Tomato	nucleus	47.1	45.54
PGSC0003DMT400060978	Potato	nucleus	45.05	45.05
GSMUA_Achr2P13770_001	Banana	cytosol, nucleus, plastid	42.32	44.29
Os03t0808300-01	Rice	plasma membrane	42.32	43.66
PGSC0003DMT400070037	Potato	nucleus	46.42	42.9
Os07t0208600-01	Rice	nucleus	37.88	42.37
OQU90788	Sorghum	nucleus	41.64	41.78
HORVU7Hr1G100790.1	Barley	nucleus	39.59	41.73
TraesCS2B01G226600.1	Wheat	cytosol, nucleus, plastid	43.69	41.56
TraesCS7D01G432700.1	Wheat	nucleus	39.25	41.52
Zm00001d021839_P001	Maize	nucleus	41.64	41.5
TraesCS7B01G342300.1	Wheat	nucleus	38.91	41.01
EER99573	Sorghum	nucleus	43.34	40.58
TraesCS2D01G206900.1	Wheat	cytosol, plastid	42.66	40.45
TraesCS5D01G477500.1	Wheat	nucleus	41.98	40.33
TraesCS5B01G476700.1	Wheat	nucleus	41.98	40.2
TraesCS2A01G199300.1	Wheat	nucleus	42.66	40.19
Os07t0569100-01	Rice	plasma membrane	43.34	40.19
TraesCS7A01G443500.1	Wheat	nucleus	38.91	40.14
TraesCS5A01G464900.1	Wheat	nucleus	41.98	39.94
KRH66963	Soybean	nucleus	30.38	39.56
HORVU5Hr1G111130.2	Barley	cytosol, nucleus	42.32	36.69
HORVU5Hr1G111120.3	Barley	cytosol	38.57	36.45
Bra033989.1-P	Field mustard	cytosol	20.48	16.9
Bra026612.1-P	Field mustard	nucleus	20.14	14.22
Bra004237.1-P	Field mustard	nucleus	15.02	13.84
Bra024828.1-P	Field mustard	nucleus	21.16	13.78
Bra032380.1-P	Field mustard	nucleus	17.41	10.52
Bra040560.1-P	Field mustard	nucleus	15.02	10.5
Bra010777.1-P	Field mustard	nucleus	19.11	10.39
Bra039695.1-P	Field mustard	cytosol	14.68	6.34
Bra040561.1-P	Field mustard	cytosol	0.34	0.42

Protein Annotations

EnsemblPlants:Bra007335.1	EnsemblPlants:Bra007335.1-P	EnsemblPlantsGene:Bra007335	InterPro:Remorin_C	ncoils:Coil	PANTHER:PTHR31471
PANTHER:PTHR31471:SF7	PFAM:PF03763	SEG:seg	UniParc:UPI0002542CF1	UniProt:M4CSZ3	MapMan:35.1

Description

AT3G57540 (E=3e-096) | remorin family protein

Coordinates

chrA09:-:28664497..28665994

Molecular Weight (calculated)

32541.6 Da

IEP (calculated)

8.926

GRAVY (calculated)

-0.917

Length

293 amino acids

Sequence
(BLAST)

001: MLTLYSQESS STEITTTSTD ASDSRDETPP SETVVRDIHA MTTTELPRPQ QRGGHLSPTR SVNFSDGASS AGENFTTVSR EFNALVIAGS SMDNNNNNNG
101: NNQSISHRDV INELTRISED EDGGGGDQHH QVPEEDTNPW AIVPDGYDNR AGSENIVTTT PSSGQNRMVT AASVQRVKRD EVEAKITAWQ TAKLAKINNR
201: FKRQEAFING WLNEQVHKAN SWMKKIERKL EERRAKAMEK TQNKVAKAQR KAEERRATAE AKRGTEVARV LEVSNLMRAV GRPPAKRSFF SIS

Best Arabidopsis Sequence Match ( AT3G57540.1 )
(BLAST)

001: MLTLYGQERS PENSTTSTTD ASDRRDETPS SEIVVRDIHA MTTTTELTRP QQRGSGGGYL SPSRSIAFSD GTTSSGENFT TVSREFNALV IAGSSMDNNS
101: NGTNQSGGHR DVIRDERNEL TRIGENDDVG DHGQVPEEDS NPWAIVPDDY NNRDGSENNI VLASSGGQNR MVTTASVQRV KREEVEAKIT AWQTAKVAKI
201: NNRFKRQDAV INGWLNEQVH RANSWMKKIE RKLEDRRAKA MEKTQNKVAK AQRKAEERRA TAEGKRGTEV ARVLEVANLM RAVGRPPAKR SFFSLS

Arabidopsis Description

Remorin family protein [Source:UniProtKB/TrEMBL;Acc:Q93YN8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.