Factsheet for Bra024828.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17607	Canola	nucleus	96.89	98.2
CDY03066	Canola	nucleus	84.0	93.8
Bra026612.1-P	Field mustard	nucleus	77.11	83.61
AT2G02170.2	Thale cress	nucleus	84.0	77.78
VIT_01s0010g01760.t01	Wine grape	nucleus	65.33	57.65
KRH58560	Soybean	nucleus	64.67	57.4
KRH42459	Soybean	nucleus	64.44	56.86
GSMUA_Achr5P11780_001	Banana	cytosol	39.78	55.42
GSMUA_Achr1P02030_001	Banana	nucleus	55.11	50.61
Solyc01g008180.2.1	Tomato	nucleus	57.78	49.81
GSMUA_Achr11P...	Banana	nucleus	54.22	49.69
TraesCS6D01G053500.1	Wheat	nucleus	52.67	46.56
TraesCS6A01G046400.1	Wheat	nucleus	52.44	46.46
TraesCS6B01G062500.1	Wheat	nucleus	52.22	46.26
Os02t0116800-01	Rice	nucleus	52.0	45.88
GSMUA_Achr2P10980_001	Banana	nucleus	42.89	45.84
HORVU0Hr1G040310.2	Barley	cytosol, mitochondrion, nucleus	52.22	45.72
Os03t0120200-01	Rice	nucleus	40.89	43.5
GSMUA_Achr5P19220_001	Banana	nucleus	40.44	43.03
Zm00001d054034_P001	Maize	nucleus	52.22	42.65
EES06158	Sorghum	nucleus, plastid	52.89	41.75
KXG40319	Sorghum	nucleus	39.33	41.75
Zm00001d027403_P001	Maize	nucleus	38.89	41.27
TraesCS5A01G517700.1	Wheat	nucleus	38.67	41.23
TraesCS4D01G343800.1	Wheat	nucleus	38.44	41.0
TraesCS4B01G349100.1	Wheat	nucleus	38.22	40.57
Zm00001d048481_P001	Maize	cytosol, mitochondrion, nucleus	37.11	39.67
Bra033989.1-P	Field mustard	cytosol	28.89	36.62
HORVU4Hr1G085140.6	Barley	nucleus, plastid	37.11	34.58
Bra032380.1-P	Field mustard	nucleus	37.11	34.43
Bra004237.1-P	Field mustard	nucleus	23.78	33.65
Bra010777.1-P	Field mustard	nucleus	37.56	31.35
Bra004657.1-P	Field mustard	cytosol	14.67	24.44
Bra040560.1-P	Field mustard	nucleus	20.0	21.48
Bra007335.1-P	Field mustard	nucleus	13.78	21.16
Bra039695.1-P	Field mustard	cytosol	20.89	13.86
Bra040561.1-P	Field mustard	cytosol	0.44	0.84

Protein Annotations

EnsemblPlants:Bra024828.1	EnsemblPlants:Bra024828.1-P	EnsemblPlantsGene:Bra024828	InterPro:Remorin_C	ncoils:Coil	PANTHER:PTHR31471
PANTHER:PTHR31471:SF1	PFAM:PF03763	SEG:seg	UniParc:UPI000253F8D7	UniProt:M4E7S2	MapMan:35.2

Description

AT2G02170 (E=2e-104) | remorin family protein

Coordinates

chrA06:+:23659401..23661142

Molecular Weight (calculated)

49708.7 Da

IEP (calculated)

10.013

GRAVY (calculated)

-0.858

Length

450 amino acids

Sequence
(BLAST)

001: MDYERIGKTQ VTTSGGGGGG LSPRKLRSML LLGADRKKKE DMIEPTPIMR SGSNQSDDLV ASGSDDCKDV DVVCEITTDY DNVCEEVKSV SASLFEFQKD
101: KAAPRLPNRS FSKPAPSKWD DAQKWIASPT SSNRPKTAAG GQVHVSKKGP GFGRQSSMKI PLEVEEPDTK RIDVSQVKKE TGQKFVSWEV NLIDNSIATE
201: VNLSRHDSSI ATAFAQPPST ARSVSMRDMG TEMTPIASQE PSRNGTPIRA TTPIRSPITS EPSSPGRRQG ASASQMSNKE LSEKELQMKT RREIMELGTQ
301: LGKLNIAAWA SKEDEDKDAS TSMKNKAASL QTSKSVSEAR ASAWEEAEKA KHMARFRREE MKIQAWENHQ KAKSEAEMRK TEVEVERIKG RAQDRLMNKL
401: AEIERKAEGK RAAAEAKKNR QAAKTEKQAE QIRRTGKVPS LMFSCFSFCS

Best Arabidopsis Sequence Match ( AT2G02170.4 )
(BLAST)

001: MDYERIGKTQ VTSSGGGFSP GKLRSMLLLG VDRKKNEEEE STPTMRSGSN QIDDPRVYVA SGLDDCKDVD VVSEITDCST SGIARSISLG LQEYSDYDNV
101: NEIKSVSASS VFEFQKTEKE KVNQRMPIRS FSKPAPSKWD DAQKWIASPT ANRPKTGQVQ VPGSKKGPSF GRQSSMKIVE VAEHRVVEEP DTKRIDVSQV
201: KKDMGNKFGS WEVDSYTTVD SYVKPVLMVE NSIVESATEV NLSRHDSSVA TAFAQPPSTA RSVSMRDMGT EMTPIASQEP SRNGTPIRAT TPIRSPISSE
301: PSSPGRQASA SPMSNKELSE KELQMKTRRE IMVLGTQLGK FNIAAWASKE DEDKDASTSL KTKASLQTSK SVSEARATAW EEAEKAKHMA RFRREEMKIQ
401: AWENHQKAKS EAEMKKTEVK VERIKGRAQD RLMKKLATIE RKAEEKRAAA EAKKDHQAAK TEKQAEQIRR TGKVPSLLFS CFSFCS

Arabidopsis Description

At2g02170/F5O4.6 [Source:UniProtKB/TrEMBL;Acc:Q9ZUM1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.