Factsheet for Bra032380.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
extracellular 1
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY09599	Canola	nucleus	96.29	98.11
CDY26269	Canola	nucleus	96.91	96.91
AT1G30320.1	Thale cress	nucleus, plastid	80.0	76.23
Bra010777.1-P	Field mustard	nucleus	79.59	71.61
VIT_10s0003g04090.t01	Wine grape	nucleus	57.94	53.42
KRH58701	Soybean	nucleus	57.53	51.67
KRH42599	Soybean	nucleus	57.32	51.48
PGSC0003DMT400031464	Potato	nucleus	53.61	50.1
KRH44798	Soybean	nucleus	56.91	50.09
Solyc08g045640.2.1	Tomato	mitochondrion	46.39	45.55
Bra026612.1-P	Field mustard	nucleus	34.02	39.76
Os12t0613600-01	Rice	nucleus	34.02	38.64
Zm00001d041496_P001	Maize	nucleus	30.1	38.32
GSMUA_Achr5P26590_001	Banana	nucleus	40.21	38.31
Os04t0620200-01	Rice	nucleus, plastid	41.65	37.97
EES11442	Sorghum	nucleus, plastid	40.82	37.15
Bra024828.1-P	Field mustard	nucleus	34.43	37.11
KXG23993	Sorghum	nucleus	34.85	36.74
TraesCS2B01G485700.1	Wheat	nucleus, plastid	39.18	35.98
GSMUA_Achr10P...	Banana	nucleus	40.21	35.98
TraesCS2D01G464900.1	Wheat	nucleus, plastid	38.97	35.73
TraesCS2A01G464000.1	Wheat	nucleus, plastid	38.56	35.55
TraesCS5A01G040500.1	Wheat	nucleus	32.58	35.19
TraesCS5D01G047600.3	Wheat	cytosol	32.37	35.04
Zm00001d002274_P001	Maize	nucleus, plastid	40.62	34.87
HORVU2Hr1G103570.7	Barley	nucleus, plastid	37.73	34.53
Bra033989.1-P	Field mustard	cytosol	24.74	33.8
TraesCS5B01G041700.1	Wheat	mitochondrion, nucleus	32.78	33.76
Bra004237.1-P	Field mustard	nucleus	20.21	30.82
HORVU5Hr1G009780.6	Barley	cytosol	30.1	30.17
Bra040560.1-P	Field mustard	nucleus	18.76	21.72
Bra004657.1-P	Field mustard	cytosol	10.93	19.63
Bra007335.1-P	Field mustard	nucleus	10.52	17.41
Bra039695.1-P	Field mustard	cytosol	20.21	14.45
Bra040561.1-P	Field mustard	cytosol	1.03	2.11

Protein Annotations

EnsemblPlants:Bra032380.1	EnsemblPlants:Bra032380.1-P	EnsemblPlantsGene:Bra032380	InterPro:Remorin_C	ncoils:Coil	PANTHER:PTHR31471
PANTHER:PTHR31471:SF17	PFAM:PF03763	SEG:seg	UniParc:UPI00025425B7	UniProt:M4EU98	MapMan:35.2

Description

AT1G30320 (E=2e-090) | remorin family protein

Coordinates

chrA09:-:21987487..21989828

Molecular Weight (calculated)

54071.0 Da

IEP (calculated)

9.029

GRAVY (calculated)

-1.028

Length

485 amino acids

Sequence
(BLAST)

001: MEYERIEKVQ KSMISPTKLR MKLMGPHNNK KKEGSSNNSS RTSPVRLQVS DDTEFSKNSL LASKSDSDED DHVAASTTDI EVAKLRNAPV LDLTESSNQG
101: GMRETDQPRP HQLKKADLSI TLRPQEDENL DYDSNASSSS FEFHGGVRGG ERSTQSHASR AYPSRQVPSK WSDAEKWILS RQNMVLRKNG QGNRMPVRVV
201: PDNTGYEHTK SRMDPCQSSQ AEGFEKFPNL VPTAPHPILT KASSHDNTTA GPASVCMRDM GTEMTPIPSQ EPSRSVTPVD ATTPLRSPTS SLPSTPRGGK
301: QVESSVSQGP SKNTRRDLSE EEMKARTRRE IVALGVQLGK TNIAAWASKE EEENNNNNNN VDAEETQRVE FGKRASAWEE AEKSKHNARY KREEIRIQAW
401: ESQEKAKLEA EMRRIEAKVQ QMKAEAEAKI VKKIAMAKQR SEEKRAAAEA RKARDAEKAA AEAEYIRETG QIPASSYKIC CGWLS

Best Arabidopsis Sequence Match ( AT1G30320.1 )
(BLAST)

001: MDYERIQKVQ KSIISPTKLR MKLMGPLNNM KREGSKSNSN SSRTSPSRLQ IPDDSEFSKN SLLASNSYSD DDVAATTTDI EVAKLPNEPV LYPTENDNQG
101: SKDRCEGVVP RENDQPRLQQ FRKGDLNMAS PHIMRPQEDE NLDYDSNASS SSFEFHRARG ERSNQNHGSR GYPSRQMPSK WNDAEKWIMS RQNMVMRKNG
201: QGNRIPVRIV PDNAGYEHNK SRMDLCQSSQ VDGFEKFPNV VPSAPHPILT QEYGGDSLID QSTQSNDLAD SSHDHTTGGP AIRSVCMRDM GTEMTPIPSQ
301: EPSRSVTPVG ATTPLRSPTS SLPSTPRGGQ PEESSMSKNT RRELSEEEEK AKTRREIVAL GVQLGKMNIA AWASKEEEEN KKNNGDAEEA QKIEFEKRAT
401: AWEEAEKSKH NARYKREEIR IQAWESQEKA KLEAEMRRIE AKVEQMKAEA EAKIMKKIAL AKQRSEEKRA LAEARKTRDA EKAVAEAQYI RETGRIPASS
501: YKICCGWFS

Arabidopsis Description

Remorin family protein [Source:UniProtKB/TrEMBL;Acc:Q9C8G3]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.