Factsheet for Bra026612.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
extracellular 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, extracellular, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	extracellular
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY09386	Canola	nucleus	88.67	91.77
Bra024828.1-P	Field mustard	nucleus	83.61	77.11
AT2G02170.2	Thale cress	nucleus	85.78	73.25
VIT_01s0010g01760.t01	Wine grape	nucleus	69.4	56.47
KRH58560	Soybean	nucleus	67.95	55.62
GSMUA_Achr5P11780_001	Banana	cytosol	43.13	55.42
KRH42459	Soybean	nucleus	67.95	55.29
GSMUA_Achr1P02030_001	Banana	nucleus	58.55	49.59
GSMUA_Achr11P...	Banana	nucleus	57.83	48.88
Solyc01g008180.2.1	Tomato	nucleus	59.52	47.32
GSMUA_Achr2P10980_001	Banana	nucleus	47.23	46.56
Os02t0116800-01	Rice	nucleus	55.66	45.29
TraesCS6D01G053500.1	Wheat	nucleus	54.7	44.6
TraesCS6A01G046400.1	Wheat	nucleus	54.46	44.49
TraesCS6B01G062500.1	Wheat	nucleus	54.22	44.29
HORVU0Hr1G040310.2	Barley	cytosol, mitochondrion, nucleus	54.22	43.77
Os03t0120200-01	Rice	nucleus	44.1	43.26
GSMUA_Achr5P19220_001	Banana	nucleus	43.13	42.32
Zm00001d054034_P001	Maize	nucleus	55.42	41.74
KXG40319	Sorghum	nucleus	42.41	41.51
Zm00001d027403_P001	Maize	nucleus	42.17	41.27
Zm00001d048481_P001	Maize	cytosol, mitochondrion, nucleus	41.2	40.62
TraesCS5A01G517700.1	Wheat	nucleus	41.2	40.52
TraesCS4D01G343800.1	Wheat	nucleus	41.2	40.52
EES06158	Sorghum	nucleus, plastid	55.42	40.35
TraesCS4B01G349100.1	Wheat	nucleus	40.96	40.09
Bra033989.1-P	Field mustard	cytosol	31.57	36.9
HORVU4Hr1G085140.6	Barley	nucleus, plastid	40.0	34.37
Bra004237.1-P	Field mustard	nucleus	26.27	34.28
Bra032380.1-P	Field mustard	nucleus	39.76	34.02
Bra010777.1-P	Field mustard	nucleus	39.04	30.06
Bra004657.1-P	Field mustard	cytosol	15.42	23.7
Bra040560.1-P	Field mustard	nucleus	22.17	21.96
Bra007335.1-P	Field mustard	nucleus	14.22	20.14
Bra039695.1-P	Field mustard	cytosol	22.89	14.01
Bra040561.1-P	Field mustard	cytosol	0.48	0.84

Protein Annotations

EnsemblPlants:Bra026612.1	EnsemblPlants:Bra026612.1-P	EnsemblPlantsGene:Bra026612	InterPro:Remorin_C	ncoils:Coil	PANTHER:PTHR31471
PANTHER:PTHR31471:SF1	PFAM:PF03763	SEG:seg	UniParc:UPI0002546A83	UniProt:M4ECV2	MapMan:35.2

Description

AT2G02170 (E=8e-139) | remorin family protein

Coordinates

chrA02:+:20648445..20650412

Molecular Weight (calculated)

45889.0 Da

IEP (calculated)

9.732

GRAVY (calculated)

-0.783

Length

415 amino acids

Sequence
(BLAST)

001: MDYERIGKTQ VTSGDGGFSP GKLRTMLLAA SGSDDCKDVD VVVTEITDYS TSATVLGDLH DYDNVNEIKS LSTASVFEFQ KDKVTPRMSV RSFSKPAPSK
101: WDDAQKWIAS PTSNRPKTGQ VQAHASKKGP SFGRQSSIKI VDEEPDTKRV DVSQVKKETG GHKFVSWEVD SYLKPVVTSA TEVNLSRHDS SMATAFAQPP
201: STARSVSMRD MGTEMTPIAS QEPSRNGTPI RATTPIRSPV TSAPSSPGRG ALSNEELSEK EMQMKTRREI MVLGTQLGKL NIAAWASKEE DASTSQTSKS
301: VSEARASAWE EAEKAKHMAR FRREEMKIQA WENHQKAKSE AEMRKMEVEV ERIKGRAQDR LMNKLAEIER KAEEKRAAAE AKKNREAAKT EKQAEQIRRT
401: GKVPSLLFSC SSFCS

Best Arabidopsis Sequence Match ( AT2G02170.4 )
(BLAST)

001: MDYERIGKTQ VTSSGGGFSP GKLRSMLLLG VDRKKNEEEE STPTMRSGSN QIDDPRVYVA SGLDDCKDVD VVSEITDCST SGIARSISLG LQEYSDYDNV
101: NEIKSVSASS VFEFQKTEKE KVNQRMPIRS FSKPAPSKWD DAQKWIASPT ANRPKTGQVQ VPGSKKGPSF GRQSSMKIVE VAEHRVVEEP DTKRIDVSQV
201: KKDMGNKFGS WEVDSYTTVD SYVKPVLMVE NSIVESATEV NLSRHDSSVA TAFAQPPSTA RSVSMRDMGT EMTPIASQEP SRNGTPIRAT TPIRSPISSE
301: PSSPGRQASA SPMSNKELSE KELQMKTRRE IMVLGTQLGK FNIAAWASKE DEDKDASTSL KTKASLQTSK SVSEARATAW EEAEKAKHMA RFRREEMKIQ
401: AWENHQKAKS EAEMKKTEVK VERIKGRAQD RLMKKLATIE RKAEEKRAAA EAKKDHQAAK TEKQAEQIRR TGKVPSLLFS CFSFCS

Arabidopsis Description

At2g02170/F5O4.6 [Source:UniProtKB/TrEMBL;Acc:Q9ZUM1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.