Factsheet for TraesCS4D01G343800.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G517700.1	Wheat	nucleus	97.39	97.39
TraesCS4B01G349100.1	Wheat	nucleus	95.97	95.52
HORVU4Hr1G085140.6	Barley	nucleus, plastid	92.65	80.95
Os03t0120200-01	Rice	nucleus	81.04	80.85
KXG40319	Sorghum	nucleus	78.67	78.3
Zm00001d027403_P001	Maize	nucleus	77.96	77.59
Zm00001d048481_P001	Maize	cytosol, mitochondrion, nucleus	74.41	74.58
GSMUA_Achr5P11780_001	Banana	cytosol	34.12	44.58
GSMUA_Achr1P02030_001	Banana	nucleus	51.42	44.29
GSMUA_Achr11P...	Banana	nucleus	50.95	43.79
VIT_01s0010g01760.t01	Wine grape	nucleus	51.42	42.55
CDY09386	Canola	nucleus	39.57	41.65
TraesCS6D01G053500.1	Wheat	nucleus	50.0	41.45
Bra026612.1-P	Field mustard	nucleus	40.52	41.2
CDY03066	Canola	nucleus	38.15	39.95
CDY15819	Canola	nucleus	41.71	39.82
KRH42459	Soybean	nucleus	48.1	39.8
GSMUA_Achr2P10980_001	Banana	nucleus	39.57	39.67
KRH58560	Soybean	nucleus	47.16	39.25
CDY17607	Canola	nucleus	41.0	38.96
AT2G02170.2	Thale cress	nucleus	44.31	38.48
Bra024828.1-P	Field mustard	nucleus	41.0	38.44
GSMUA_Achr5P19220_001	Banana	nucleus	36.49	36.41
Solyc01g008180.2.1	Tomato	nucleus	44.31	35.82
TraesCS4D01G075000.1	Wheat	nucleus	25.83	30.88
TraesCS5D01G047600.3	Wheat	cytosol	31.75	29.91
TraesCS2D01G464900.1	Wheat	nucleus, plastid	32.46	25.9
TraesCS2D01G206900.1	Wheat	cytosol, plastid	17.06	23.3
TraesCS5D01G477500.1	Wheat	nucleus	15.17	20.98
TraesCS7D01G432700.1	Wheat	nucleus	13.51	20.58
TraesCS2D01G343900.1	Wheat	plastid	19.67	20.0

Protein Annotations

EnsemblPlants:TraesCS4D01G343800.1	EnsemblPlantsGene:TraesCS4D01G343800	InterPro:Remorin_C	ncoils:Coil	PANTHER:PTHR31471	PANTHER:PTHR31471:SF18
PFAM:PF03763	SEG:seg	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr4D:+:499497531..499500910

Molecular Weight (calculated)

46427.0 Da

IEP (calculated)

6.913

GRAVY (calculated)

-0.849

Length

422 amino acids

Sequence
(BLAST)

001: MDYERIHDPP HRQSGGFSPA KLRAMLLGLE KHQHSGEDTS PEANDSGELD DRRSLECSTS TEMSSNSGHR SRNRAPEDDS FDSESSSSGP TTVKRAAAVS
101: ALLPPFSRPT PSKWDDAEKW ISSPTANRTG RVMTAAGFAP KKTAFALPEH GACPPAAAKV VAEVPRNTGT LTDNSVGSTQ PDSIKPAETA PIVDEPEHVI
201: RSVSMRDMGT EMTPIASQEP SRTGTPIIAS SPTSTRTPTP NRSVEFGVGT IDSSKMGMSE EELQLNTRKE IMDLGERLGK TTIAAWASKE ERATANFANV
301: PADKAVEIDR ETRAADWHEA EKAKYLARFQ REEVKIQAWE NHQRAKIEAE MKSIEAKMER KRAREHDRLA RKLASARSRA EAKREAAEAR RSQEAERTDE
401: QAAQIRKTGH IPSSISCWCW CL

Best Arabidopsis Sequence Match ( AT2G02170.4 )
(BLAST)

001: MDYERIGKTQ VTSSGGGFSP GKLRSMLLLG VDRKKNEEEE STPTMRSGSN QIDDPRVYVA SGLDDCKDVD VVSEITDCST SGIARSISLG LQEYSDYDNV
101: NEIKSVSASS VFEFQKTEKE KVNQRMPIRS FSKPAPSKWD DAQKWIASPT ANRPKTGQVQ VPGSKKGPSF GRQSSMKIVE VAEHRVVEEP DTKRIDVSQV
201: KKDMGNKFGS WEVDSYTTVD SYVKPVLMVE NSIVESATEV NLSRHDSSVA TAFAQPPSTA RSVSMRDMGT EMTPIASQEP SRNGTPIRAT TPIRSPISSE
301: PSSPGRQASA SPMSNKELSE KELQMKTRRE IMVLGTQLGK FNIAAWASKE DEDKDASTSL KTKASLQTSK SVSEARATAW EEAEKAKHMA RFRREEMKIQ
401: AWENHQKAKS EAEMKKTEVK VERIKGRAQD RLMKKLATIE RKAEEKRAAA EAKKDHQAAK TEKQAEQIRR TGKVPSLLFS CFSFCS

Arabidopsis Description

At2g02170/F5O4.6 [Source:UniProtKB/TrEMBL;Acc:Q9ZUM1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.