Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G342300.1 | Wheat | nucleus | 94.95 | 94.6 |
| TraesCS7A01G443500.1 | Wheat | nucleus | 95.67 | 93.31 |
| HORVU7Hr1G100790.1 | Barley | nucleus | 93.14 | 92.81 |
| Solyc10g080240.1.1 | Tomato | cytosol | 11.91 | 66.0 |
| Os07t0208600-01 | Rice | nucleus | 58.48 | 61.83 |
| GSMUA_Achr4P33120_001 | Banana | nucleus | 45.85 | 46.69 |
| GSMUA_Achr6P00160_001 | Banana | nucleus | 44.4 | 45.39 |
| VIT_08s0007g08280.t01 | Wine grape | nucleus | 43.68 | 44.65 |
| TraesCS5D01G477500.1 | Wheat | nucleus | 48.01 | 43.61 |
| GSMUA_Achr2P13770_001 | Banana | cytosol, nucleus, plastid | 44.04 | 43.57 |
| TraesCS2D01G206900.1 | Wheat | cytosol, plastid | 48.01 | 43.04 |
| CDY48774 | Canola | nucleus | 41.52 | 42.59 |
| Bra004657.1-P | Field mustard | cytosol | 41.52 | 42.59 |
| CDX79905 | Canola | nucleus | 41.16 | 42.38 |
| AT2G41870.1 | Thale cress | nucleus | 40.79 | 41.24 |
| KRG95278 | Soybean | nucleus | 40.07 | 40.96 |
| Solyc04g015520.2.1 | Tomato | nucleus | 44.77 | 40.92 |
| KRH71974 | Soybean | nucleus | 42.96 | 39.8 |
| CDX72021 | Canola | nucleus | 38.99 | 39.71 |
| KRH33097 | Soybean | nucleus | 42.24 | 39.53 |
| Bra007335.1-P | Field mustard | nucleus | 41.52 | 39.25 |
| PGSC0003DMT400070037 | Potato | nucleus | 44.77 | 39.12 |
| AT3G57540.1 | Thale cress | nucleus | 41.52 | 38.85 |
| CDY06095 | Canola | nucleus | 40.79 | 38.57 |
| PGSC0003DMT400060978 | Potato | nucleus | 40.43 | 38.23 |
| Solyc10g080230.1.1 | Tomato | cytosol | 20.58 | 36.08 |
| KRH66963 | Soybean | nucleus | 24.91 | 30.67 |
| TraesCS4D01G075000.1 | Wheat | nucleus | 24.19 | 18.98 |
| TraesCS4D01G343800.1 | Wheat | nucleus | 20.58 | 13.51 |
| TraesCS6D01G053500.1 | Wheat | nucleus | 23.47 | 12.77 |
| TraesCS2D01G343900.1 | Wheat | plastid | 18.05 | 12.05 |
| TraesCS5D01G047600.3 | Wheat | cytosol | 16.97 | 10.49 |
| TraesCS2D01G464900.1 | Wheat | nucleus, plastid | 18.41 | 9.64 |
Protein Annotations
| EnsemblPlants:TraesCS7D01G432700.1 | EnsemblPlantsGene:TraesCS7D01G432700 | InterPro:Remorin_C | ncoils:Coil | PANTHER:PTHR31471 | PANTHER:PTHR31471:SF11 |
| PFAM:PF03763 | SEG:seg | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr7D:-:552285238..552286174
Molecular Weight (calculated)
30025.8 Da
IEP (calculated)
5.020
GRAVY (calculated)
-0.656
Length
277 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSSDPIDHM SVSERLQRLA TPSAPAEDDV DVDADGDGAT FRDIHPSPAP APLRQPSWDV ASQRSLSSYS DEQFMSSMGR EFTAMVDAGG APADPCPGRD
101: SGAGNNDLQL ARIGEHEPVP ETETNPLAIV ADTGRPLLPS SSSCAAPAAA EVVEVRQVKK EEAEAKVAAW QAEEVAKINN KFKREEVVIN GWENQQIHTA
201: TTYLSKIERK LEEERAKATE KAQNEVARAR RKAEEKRASA EAARGTKTAR VMDLANFMKA VGRLPTKRSF FSFSSSS
101: SGAGNNDLQL ARIGEHEPVP ETETNPLAIV ADTGRPLLPS SSSCAAPAAA EVVEVRQVKK EEAEAKVAAW QAEEVAKINN KFKREEVVIN GWENQQIHTA
201: TTYLSKIERK LEEERAKATE KAQNEVARAR RKAEEKRASA EAARGTKTAR VMDLANFMKA VGRLPTKRSF FSFSSSS
001: MLTLYHQERS PDATSNDRDE TPETVVREVH ALTPAPEDNS RTMTATLPPP PAFRGYFSPP RSATTMSEGE NFTTISREFN ALVIAGSSME NNELMTRDVT
101: QREDERQDEL MRIHEDTDHE EETNPLAIVP DQYPGSGLDP GSDNGPGQSR VGSTVQRVKR EEVEAKITAW QTAKLAKINN RFKREDAVIN GWFNEQVNKA
201: NSWMKKIERK LEERKAKAME KTQNNVAKAQ RKAEERRATA EAKRGTEVAK VVEVANLMRA LGRPPAKRSF FSFS
101: QREDERQDEL MRIHEDTDHE EETNPLAIVP DQYPGSGLDP GSDNGPGQSR VGSTVQRVKR EEVEAKITAW QTAKLAKINN RFKREDAVIN GWFNEQVNKA
201: NSWMKKIERK LEERKAKAME KTQNNVAKAQ RKAEERRATA EAKRGTEVAK VVEVANLMRA LGRPPAKRSF FSFS
Arabidopsis Description
Putative DNA binding protein [Source:UniProtKB/TrEMBL;Acc:P93758]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.