Factsheet for TraesCS4D01G075000.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G076500.1	Wheat	nucleus	96.88	96.61
HORVU4Hr1G012760.3	Barley	nucleus	95.75	96.3
TraesCS4A01G238400.1	Wheat	nucleus	95.18	96.28
Zm00001d050790_P003	Maize	nucleus	64.87	67.55
OQU85140	Sorghum	cytosol	67.71	66.57
GSMUA_Achr9P07790_001	Banana	nucleus	54.39	61.15
GSMUA_Achr3P17060_001	Banana	nucleus	55.24	56.52
AT1G67590.1	Thale cress	nucleus	51.84	52.74
CDY12657	Canola	cytosol	52.41	52.41
CDY32543	Canola	nucleus	52.12	52.12
Bra033989.1-P	Field mustard	cytosol	52.41	52.11
CDY01823	Canola	nucleus	51.56	51.41
VIT_01s0010g02560.t01	Wine grape	nucleus	52.12	51.25
CDX96080	Canola	nucleus	51.27	50.99
PGSC0003DMT400044982	Potato	nucleus	49.01	49.71
Solyc05g014710.2.1	Tomato	nucleus	49.01	49.43
Bra004237.1-P	Field mustard	nucleus	43.06	47.8
KRH58742	Soybean	nucleus	47.31	45.5
KRH42640	Soybean	nucleus	46.74	44.96
TraesCS4D01G343800.1	Wheat	nucleus	30.88	25.83
TraesCS6D01G053500.1	Wheat	nucleus	35.69	24.75
TraesCS7D01G432700.1	Wheat	nucleus	18.98	24.19
TraesCS5D01G477500.1	Wheat	nucleus	19.26	22.3
TraesCS2D01G206900.1	Wheat	cytosol, plastid	19.26	22.01
TraesCS5D01G047600.3	Wheat	cytosol	27.76	21.88
TraesCS2D01G464900.1	Wheat	nucleus, plastid	30.03	20.04
TraesCS2D01G343900.1	Wheat	plastid	22.95	19.52

Protein Annotations

EnsemblPlants:TraesCS4D01G075000.1	EnsemblPlantsGene:TraesCS4D01G075000	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
InterPro:Remorin_C	ncoils:Coil	PANTHER:PTHR31471	PANTHER:PTHR31471:SF15	PFAM:PF03763	SEG:seg
MapMan:35.2	:	:	:	:	:

Description

No Description!

Coordinates

chr4D:-:49578900..49580593

Molecular Weight (calculated)

37868.4 Da

IEP (calculated)

9.986

GRAVY (calculated)

-0.820

Length

353 amino acids

Sequence
(BLAST)

001: MQATARQVED KECYSYTTNG AANGRPHRKN PAASSRLKPM PSKWDDAQKW LVGMSNGGGD GLHGGGGKAA KPRNSNADDR RLLSSSSQNG RISCSSVDGG
101: IEYNMVAAPP TPPQLGEDDV GETKNMDCSM VRPHAHGSPV SVCLRDMGTE MTPIASKEPS RAATPLRSTT PVARSPIPSR SSTPGRRRQD APPAGALGSD
201: VVRTAEQPAV SNNAVGGGEA DRDSDGGAVG GAPRANTLES RAAAWDEAER AKFMARYKRE EVKIQAWENH EKRKAELEMK KIEMKAEQMK ARAQEKLASK
301: LATARRVAEE KRAVAEATLN EGAARTSEKA DYIRRTGHLP SSFFSFRIPS LCG

Best Arabidopsis Sequence Match ( AT1G67590.1 )
(BLAST)

001: MRSSVEDNKG WIGPATPEIS NGFEFQKGSN RTPNHHRSTM GKPAPSKWDD AQKWLSGVGF ARGGGGGGDK SSHHSRSNKP RNSNADDLRL IASASQRERE
101: GEDQYVEYDD EEMAAGRPEV ETKNVDCGES VWRKESSINP TAVIRSVCVR DMGTEMTPIG SQEPSRTATP VRATTPVGRS PVTSPVRASQ RGEAVGVVME
201: TVTEVRRVES NNSEKVNGFV ESKKAMSAME ARAMAWDEAE RAKFMARYKR EEVKIQAWEN HEKRKAEMEM KKMEVKAERM KARAEEKLAN KLAATKRIAE
301: ERRANAEAKL NEKAVKTSEK ADYIRRSGHL PSSFSFSFKL PSRCWCQ

Arabidopsis Description

F12A21.28 [Source:UniProtKB/TrEMBL;Acc:Q9SR48]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.