CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH58742	Soybean	nucleus	92.37	92.37
PGSC0003DMT400044982	Potato	nucleus	58.04	61.21
Solyc05g014710.2.1	Tomato	nucleus	58.04	60.86
VIT_01s0010g02560.t01	Wine grape	nucleus	58.58	59.89
AT1G67590.1	Thale cress	nucleus	53.13	56.2
GSMUA_Achr9P07790_001	Banana	nucleus	47.68	55.73
CDY12657	Canola	cytosol	53.13	55.24
Bra033989.1-P	Field mustard	cytosol	53.13	54.93
CDY01823	Canola	nucleus	52.86	54.8
CDX96080	Canola	nucleus	52.59	54.37
CDY32543	Canola	nucleus	52.04	54.11
Bra004237.1-P	Field mustard	nucleus	43.87	50.63
GSMUA_Achr3P17060_001	Banana	nucleus	47.41	50.43
TraesCS4A01G238400.1	Wheat	nucleus	44.96	47.28
HORVU4Hr1G012760.3	Barley	nucleus	44.96	47.01
TraesCS4D01G075000.1	Wheat	nucleus	44.96	46.74
TraesCS4B01G076500.1	Wheat	nucleus	44.69	46.33
Zm00001d050790_P003	Maize	nucleus	40.05	43.36
OQU85140	Sorghum	cytosol	40.87	41.78
Zm00001d051005_P001	Maize	mitochondrion, nucleus	32.15	37.94
EES05380	Sorghum	mitochondrion	31.06	34.23
Os02t0602000-01	Rice	mitochondrion	27.25	29.41
KRH58560	Soybean	nucleus	35.97	26.04
KRH42459	Soybean	nucleus	35.69	25.69
KRG95278	Soybean	nucleus	15.26	20.66
KRH58701	Soybean	nucleus	30.25	20.56
KRH42599	Soybean	nucleus	29.97	20.37
KRH44798	Soybean	nucleus	29.7	19.78
KRH33097	Soybean	nucleus	15.53	19.26
KRH71974	Soybean	nucleus	15.53	19.06
KRH06283	Soybean	cytosol	22.62	17.55
KRH47718	Soybean	nucleus	22.07	17.27
KRH66963	Soybean	nucleus	9.26	15.11

Protein Annotations

EMBL:ACUP02004822	EnsemblPlants:KRH42640	EnsemblPlantsGene:GLYMA_08G102500	EntrezGene:100813335	InterPro:Remorin_C	ncoils:Coil
PANTHER:PTHR31471	PANTHER:PTHR31471:SF15	PFAM:PF03763	ProteinID:KRH42640	ProteinID:KRH42640.1	ProteinID:KRH42641.1
ProteinID:KRH42642.1	SEG:seg	UniParc:UPI0002338C7D	UniProt:I1KRZ7	MapMan:35.2	:

Description

hypothetical protein

Coordinates

chr8:+:7866420..7869864

Molecular Weight (calculated)

41481.4 Da

IEP (calculated)

9.454

GRAVY (calculated)

-1.105

Length

367 amino acids

Sequence
(BLAST)

001: MRYVEDKGCY NNNGPTQETP NSSAMYSEFH KGKDATSVSN HHHRATMGKP TPSKWDDAQK WLVGLSKGGG EKSHSKSKPR NSNADDLRLI APVPQKENDY
101: SSSEKEEEEN DACHDFIMTN NIISANATAA QYEAEAKRVE CDESNWRSNN NNNKRSSENY TIQVQPICFR DMGTEMTPIA SQEPSRTGTP IRATTPATRS
201: PIHSGASTPM RGQNGSQHVA ETTRKCGNGE GSTSPCKRTH EDHQARKLSP LESRAMAWDE AERAKYMARF KREEVKIQAW ENHQIRKAEM EMKKMEVKAE
301: RMKALAQERF TNKLASTKRI AEEKRANAQV KLNDKALRAT ERVEYIRRTG HVPSSFSLSF KLPSICW

Best Arabidopsis Sequence Match ( AT1G67590.1 )
(BLAST)

001: MRSSVEDNKG WIGPATPEIS NGFEFQKGSN RTPNHHRSTM GKPAPSKWDD AQKWLSGVGF ARGGGGGGDK SSHHSRSNKP RNSNADDLRL IASASQRERE
101: GEDQYVEYDD EEMAAGRPEV ETKNVDCGES VWRKESSINP TAVIRSVCVR DMGTEMTPIG SQEPSRTATP VRATTPVGRS PVTSPVRASQ RGEAVGVVME
201: TVTEVRRVES NNSEKVNGFV ESKKAMSAME ARAMAWDEAE RAKFMARYKR EEVKIQAWEN HEKRKAEMEM KKMEVKAERM KARAEEKLAN KLAATKRIAE
301: ERRANAEAKL NEKAVKTSEK ADYIRRSGHL PSSFSFSFKL PSRCWCQ

Arabidopsis Description

F12A21.28 [Source:UniProtKB/TrEMBL;Acc:Q9SR48]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.