Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra033989.1-P | Field mustard | cytosol | 99.72 | 99.15 |
| CDY32543 | Canola | nucleus | 97.17 | 97.17 |
| CDY01823 | Canola | nucleus | 88.67 | 88.42 |
| CDX96080 | Canola | nucleus | 88.67 | 88.17 |
| AT1G67590.1 | Thale cress | nucleus | 83.57 | 85.01 |
| PGSC0003DMT400044982 | Potato | nucleus | 57.51 | 58.33 |
| Solyc05g014710.2.1 | Tomato | nucleus | 57.51 | 58.0 |
| VIT_01s0010g02560.t01 | Wine grape | nucleus | 58.92 | 57.94 |
| GSMUA_Achr9P07790_001 | Banana | nucleus | 49.58 | 55.73 |
| KRH58742 | Soybean | nucleus | 55.81 | 53.68 |
| KRH42640 | Soybean | nucleus | 55.24 | 53.13 |
| TraesCS4A01G238400.1 | Wheat | nucleus | 52.41 | 53.01 |
| HORVU4Hr1G012760.3 | Barley | nucleus | 52.41 | 52.71 |
| TraesCS4D01G075000.1 | Wheat | nucleus | 52.41 | 52.41 |
| TraesCS4B01G076500.1 | Wheat | nucleus | 52.12 | 51.98 |
| GSMUA_Achr3P17060_001 | Banana | nucleus | 50.71 | 51.88 |
| Zm00001d050790_P003 | Maize | nucleus | 46.46 | 48.38 |
| OQU85140 | Sorghum | cytosol | 47.59 | 46.8 |
| Zm00001d051005_P001 | Maize | mitochondrion, nucleus | 35.13 | 39.87 |
| EES05380 | Sorghum | mitochondrion | 35.41 | 37.54 |
| CDY09386 | Canola | nucleus | 36.83 | 32.42 |
| CDY03066 | Canola | nucleus | 35.69 | 31.27 |
| Os02t0602000-01 | Rice | mitochondrion | 29.46 | 30.59 |
| CDY15819 | Canola | nucleus | 37.11 | 29.64 |
| CDY17607 | Canola | nucleus | 36.83 | 29.28 |
| CDY09599 | Canola | nucleus | 33.99 | 25.21 |
| CDY26269 | Canola | nucleus | 34.28 | 24.95 |
| CDX79905 | Canola | nucleus | 17.85 | 23.42 |
| CDX90244 | Canola | nucleus | 32.86 | 23.2 |
| CDY12047 | Canola | nucleus | 32.86 | 23.2 |
| CDY48774 | Canola | nucleus | 17.56 | 22.96 |
| CDX72021 | Canola | nucleus | 16.71 | 21.69 |
| CDY06095 | Canola | nucleus | 17.0 | 20.48 |
| CDY68168 | Canola | nucleus | 22.95 | 19.33 |
| CDY08209 | Canola | nucleus | 22.66 | 19.09 |
| CDY36609 | Canola | cytosol | 24.93 | 13.69 |
| CDY24070 | Canola | extracellular | 25.21 | 12.16 |
| CDY62474 | Canola | nucleus | 22.1 | 8.92 |
| CDY62472 | Canola | nucleus | 22.1 | 8.92 |
Protein Annotations
| EnsemblPlants:CDY12657 | EnsemblPlantsGene:GSBRNA2T00070175001 | InterPro:Remorin_C | ncoils:Coil | PANTHER:PTHR31471 | PANTHER:PTHR31471:SF15 |
| PFAM:PF03763 | ProteinID:CDY12657 | ProteinID:CDY12657.1 | SEG:seg | UniParc:UPI0004EEA3FB | UniProt:A0A078FI83 |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaA02g13250DBnaA02g13250D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FI83]
Coordinates
chrLK032025:-:558780..560476
Molecular Weight (calculated)
39036.7 Da
IEP (calculated)
9.440
GRAVY (calculated)
-0.956
Length
353 amino acids
Sequence
(BLAST)
(BLAST)
001: MRSQGVEDNK GCLGPGTPEM NGHGNIGFEF QKGSNRTPNH HRSTMGKPAP SKWDDAQKWL SGVGLSRGGG GGEKNHHSRS CKPRNSNADD LRLIASASQR
101: EREGEDQYVE YEDGDAAAGR PEVETKNVDC GEPGGSVWRK ESINPTAAIR SVCVRDMGTE MTPIGSQEPS RTATPVRATT PVGRSPVTSP VRASRCGETV
201: RMATEVATVT ETRSVASNNN ENIGLGDNSN TKAMNAMEAR AMAWDEAERA KFMARYKREE VKIQAWENHE KRKAEMEMKK MEVKAERMKA RAEEKLANKL
301: AATKRIAEER RANAEAKLNE MSVRTSERAD YIRRSGHLPS SFSFKFPSFS LCW
101: EREGEDQYVE YEDGDAAAGR PEVETKNVDC GEPGGSVWRK ESINPTAAIR SVCVRDMGTE MTPIGSQEPS RTATPVRATT PVGRSPVTSP VRASRCGETV
201: RMATEVATVT ETRSVASNNN ENIGLGDNSN TKAMNAMEAR AMAWDEAERA KFMARYKREE VKIQAWENHE KRKAEMEMKK MEVKAERMKA RAEEKLANKL
301: AATKRIAEER RANAEAKLNE MSVRTSERAD YIRRSGHLPS SFSFKFPSFS LCW
001: MRSSVEDNKG WIGPATPEIS NGFEFQKGSN RTPNHHRSTM GKPAPSKWDD AQKWLSGVGF ARGGGGGGDK SSHHSRSNKP RNSNADDLRL IASASQRERE
101: GEDQYVEYDD EEMAAGRPEV ETKNVDCGES VWRKESSINP TAVIRSVCVR DMGTEMTPIG SQEPSRTATP VRATTPVGRS PVTSPVRASQ RGEAVGVVME
201: TVTEVRRVES NNSEKVNGFV ESKKAMSAME ARAMAWDEAE RAKFMARYKR EEVKIQAWEN HEKRKAEMEM KKMEVKAERM KARAEEKLAN KLAATKRIAE
301: ERRANAEAKL NEKAVKTSEK ADYIRRSGHL PSSFSFSFKL PSRCWCQ
101: GEDQYVEYDD EEMAAGRPEV ETKNVDCGES VWRKESSINP TAVIRSVCVR DMGTEMTPIG SQEPSRTATP VRATTPVGRS PVTSPVRASQ RGEAVGVVME
201: TVTEVRRVES NNSEKVNGFV ESKKAMSAME ARAMAWDEAE RAKFMARYKR EEVKIQAWEN HEKRKAEMEM KKMEVKAERM KARAEEKLAN KLAATKRIAE
301: ERRANAEAKL NEKAVKTSEK ADYIRRSGHL PSSFSFSFKL PSRCWCQ
Arabidopsis Description
F12A21.28 [Source:UniProtKB/TrEMBL;Acc:Q9SR48]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.