Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDX96080 | Canola | nucleus | 85.88 | 83.94 |
CDY01823 | Canola | nucleus | 85.59 | 83.9 |
Bra033989.1-P | Field mustard | cytosol | 85.59 | 83.66 |
CDY12657 | Canola | cytosol | 85.01 | 83.57 |
Bra004237.1-P | Field mustard | nucleus | 76.37 | 83.33 |
CDY32543 | Canola | nucleus | 84.15 | 82.72 |
PGSC0003DMT400044982 | Potato | nucleus | 58.5 | 58.33 |
Solyc05g014710.2.1 | Tomato | nucleus | 58.5 | 58.0 |
VIT_01s0010g02560.t01 | Wine grape | nucleus | 57.64 | 55.71 |
GSMUA_Achr9P07790_001 | Banana | nucleus | 49.57 | 54.78 |
KRH58742 | Soybean | nucleus | 57.06 | 53.95 |
KRH42640 | Soybean | nucleus | 56.2 | 53.13 |
TraesCS4A01G238400.1 | Wheat | nucleus | 52.74 | 52.44 |
HORVU4Hr1G012760.3 | Barley | nucleus | 52.74 | 52.14 |
TraesCS4D01G075000.1 | Wheat | nucleus | 52.74 | 51.84 |
TraesCS4B01G076500.1 | Wheat | nucleus | 52.45 | 51.41 |
GSMUA_Achr3P17060_001 | Banana | nucleus | 49.86 | 50.14 |
Zm00001d050790_P003 | Maize | nucleus | 47.26 | 48.38 |
OQU85140 | Sorghum | cytosol | 48.7 | 47.08 |
Zm00001d051005_P001 | Maize | mitochondrion, nucleus | 35.73 | 39.87 |
EES05380 | Sorghum | mitochondrion | 35.73 | 37.24 |
Os02t0602000-01 | Rice | mitochondrion | 30.26 | 30.88 |
AT2G02170.2 | Thale cress | nucleus | 38.62 | 27.57 |
AT1G30320.1 | Thale cress | nucleus, plastid | 35.73 | 24.36 |
AT2G41870.1 | Thale cress | nucleus | 19.02 | 24.09 |
AT1G53860.1 | Thale cress | nucleus | 25.65 | 20.14 |
AT3G57540.1 | Thale cress | nucleus | 17.0 | 19.93 |
Protein Annotations
MapMan:35.2 | EntrezGene:843080 | ProteinID:AAG28898.1 | ProteinID:AAG52296.1 | ProteinID:AEE34668.1 | ArrayExpress:AT1G67590 |
EnsemblPlantsGene:AT1G67590 | RefSeq:AT1G67590 | TAIR:AT1G67590 | RefSeq:AT1G67590-TAIR-G | EnsemblPlants:AT1G67590.1 | TAIR:AT1G67590.1 |
ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0008150 | RefSeq:NP_564900.1 | PFAM:PF03763 |
PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001078 | PO:PO:0001081 |
PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009001 |
PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
PANTHER:PTHR31471 | PANTHER:PTHR31471:SF15 | UniProt:Q9SR48 | InterPro:Remorin_C | UniParc:UPI00000A3DE2 | SEG:seg |
Description
F12A21.28 [Source:UniProtKB/TrEMBL;Acc:Q9SR48]
Coordinates
chr1:-:25333058..25335025
Molecular Weight (calculated)
38785.5 Da
IEP (calculated)
9.934
GRAVY (calculated)
-0.968
Length
347 amino acids
Sequence
(BLAST)
(BLAST)
001: MRSSVEDNKG WIGPATPEIS NGFEFQKGSN RTPNHHRSTM GKPAPSKWDD AQKWLSGVGF ARGGGGGGDK SSHHSRSNKP RNSNADDLRL IASASQRERE
101: GEDQYVEYDD EEMAAGRPEV ETKNVDCGES VWRKESSINP TAVIRSVCVR DMGTEMTPIG SQEPSRTATP VRATTPVGRS PVTSPVRASQ RGEAVGVVME
201: TVTEVRRVES NNSEKVNGFV ESKKAMSAME ARAMAWDEAE RAKFMARYKR EEVKIQAWEN HEKRKAEMEM KKMEVKAERM KARAEEKLAN KLAATKRIAE
301: ERRANAEAKL NEKAVKTSEK ADYIRRSGHL PSSFSFSFKL PSRCWCQ
101: GEDQYVEYDD EEMAAGRPEV ETKNVDCGES VWRKESSINP TAVIRSVCVR DMGTEMTPIG SQEPSRTATP VRATTPVGRS PVTSPVRASQ RGEAVGVVME
201: TVTEVRRVES NNSEKVNGFV ESKKAMSAME ARAMAWDEAE RAKFMARYKR EEVKIQAWEN HEKRKAEMEM KKMEVKAERM KARAEEKLAN KLAATKRIAE
301: ERRANAEAKL NEKAVKTSEK ADYIRRSGHL PSSFSFSFKL PSRCWCQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.