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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • cytosol 1
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX96080 Canola nucleus 85.88 83.94
CDY01823 Canola nucleus 85.59 83.9
Bra033989.1-P Field mustard cytosol 85.59 83.66
CDY12657 Canola cytosol 85.01 83.57
Bra004237.1-P Field mustard nucleus 76.37 83.33
CDY32543 Canola nucleus 84.15 82.72
PGSC0003DMT400044982 Potato nucleus 58.5 58.33
Solyc05g014710.2.1 Tomato nucleus 58.5 58.0
VIT_01s0010g02560.t01 Wine grape nucleus 57.64 55.71
GSMUA_Achr9P07790_001 Banana nucleus 49.57 54.78
KRH58742 Soybean nucleus 57.06 53.95
KRH42640 Soybean nucleus 56.2 53.13
TraesCS4A01G238400.1 Wheat nucleus 52.74 52.44
HORVU4Hr1G012760.3 Barley nucleus 52.74 52.14
TraesCS4D01G075000.1 Wheat nucleus 52.74 51.84
TraesCS4B01G076500.1 Wheat nucleus 52.45 51.41
GSMUA_Achr3P17060_001 Banana nucleus 49.86 50.14
Zm00001d050790_P003 Maize nucleus 47.26 48.38
OQU85140 Sorghum cytosol 48.7 47.08
Zm00001d051005_P001 Maize mitochondrion, nucleus 35.73 39.87
EES05380 Sorghum mitochondrion 35.73 37.24
Os02t0602000-01 Rice mitochondrion 30.26 30.88
AT2G02170.2 Thale cress nucleus 38.62 27.57
AT1G30320.1 Thale cress nucleus, plastid 35.73 24.36
AT2G41870.1 Thale cress nucleus 19.02 24.09
AT1G53860.1 Thale cress nucleus 25.65 20.14
AT3G57540.1 Thale cress nucleus 17.0 19.93
Protein Annotations
MapMan:35.2EntrezGene:843080ProteinID:AAG28898.1ProteinID:AAG52296.1ProteinID:AEE34668.1ArrayExpress:AT1G67590
EnsemblPlantsGene:AT1G67590RefSeq:AT1G67590TAIR:AT1G67590RefSeq:AT1G67590-TAIR-GEnsemblPlants:AT1G67590.1TAIR:AT1G67590.1
ncoils:CoilGO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0005488GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0008150RefSeq:NP_564900.1PFAM:PF03763
PO:PO:0000013PO:PO:0000037PO:PO:0000230PO:PO:0000293PO:PO:0001078PO:PO:0001081
PO:PO:0001185PO:PO:0004507PO:PO:0007064PO:PO:0007095PO:PO:0007098PO:PO:0007103
PO:PO:0007115PO:PO:0007123PO:PO:0007611PO:PO:0007616PO:PO:0008019PO:PO:0009001
PO:PO:0009005PO:PO:0009006PO:PO:0009009PO:PO:0009010PO:PO:0009025PO:PO:0009029
PO:PO:0009030PO:PO:0009031PO:PO:0009032PO:PO:0009046PO:PO:0009047PO:PO:0009052
PO:PO:0020030PO:PO:0020038PO:PO:0020100PO:PO:0020137PO:PO:0025022PO:PO:0025281
PANTHER:PTHR31471PANTHER:PTHR31471:SF15UniProt:Q9SR48InterPro:Remorin_CUniParc:UPI00000A3DE2SEG:seg
Description
F12A21.28 [Source:UniProtKB/TrEMBL;Acc:Q9SR48]
Coordinates
chr1:-:25333058..25335025
Molecular Weight (calculated)
38785.5 Da
IEP (calculated)
9.934
GRAVY (calculated)
-0.968
Length
347 amino acids
Sequence
(BLAST)
001: MRSSVEDNKG WIGPATPEIS NGFEFQKGSN RTPNHHRSTM GKPAPSKWDD AQKWLSGVGF ARGGGGGGDK SSHHSRSNKP RNSNADDLRL IASASQRERE
101: GEDQYVEYDD EEMAAGRPEV ETKNVDCGES VWRKESSINP TAVIRSVCVR DMGTEMTPIG SQEPSRTATP VRATTPVGRS PVTSPVRASQ RGEAVGVVME
201: TVTEVRRVES NNSEKVNGFV ESKKAMSAME ARAMAWDEAE RAKFMARYKR EEVKIQAWEN HEKRKAEMEM KKMEVKAERM KARAEEKLAN KLAATKRIAE
301: ERRANAEAKL NEKAVKTSEK ADYIRRSGHL PSSFSFSFKL PSRCWCQ
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.