Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
- cytosol 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY09386 | Canola | nucleus | 72.02 | 87.28 |
| CDY03066 | Canola | nucleus | 71.19 | 85.86 |
| Bra026612.1-P | Field mustard | nucleus | 73.25 | 85.78 |
| CDY15819 | Canola | nucleus | 77.16 | 84.84 |
| Bra024828.1-P | Field mustard | nucleus | 77.78 | 84.0 |
| CDY17607 | Canola | nucleus | 76.34 | 83.56 |
| VIT_01s0010g01760.t01 | Wine grape | nucleus | 65.64 | 62.55 |
| KRH58560 | Soybean | nucleus | 63.99 | 61.34 |
| KRH42459 | Soybean | nucleus | 63.79 | 60.78 |
| GSMUA_Achr5P11780_001 | Banana | cytosol | 37.65 | 56.66 |
| Solyc01g008180.2.1 | Tomato | nucleus | 57.0 | 53.07 |
| GSMUA_Achr1P02030_001 | Banana | nucleus | 53.5 | 53.06 |
| GSMUA_Achr11P... | Banana | nucleus | 53.09 | 52.55 |
| TraesCS6D01G053500.1 | Wheat | nucleus | 50.82 | 48.53 |
| TraesCS6A01G046400.1 | Wheat | nucleus | 50.41 | 48.23 |
| GSMUA_Achr2P10980_001 | Banana | nucleus | 41.77 | 48.22 |
| Os02t0116800-01 | Rice | nucleus | 50.41 | 48.04 |
| TraesCS6B01G062500.1 | Wheat | nucleus | 50.21 | 48.03 |
| HORVU0Hr1G040310.2 | Barley | cytosol, mitochondrion, nucleus | 50.62 | 47.86 |
| Os03t0120200-01 | Rice | nucleus | 40.95 | 47.04 |
| TraesCS5A01G517700.1 | Wheat | nucleus | 38.68 | 44.55 |
| Zm00001d054034_P001 | Maize | nucleus | 50.41 | 44.46 |
| GSMUA_Achr5P19220_001 | Banana | nucleus | 38.68 | 44.44 |
| Zm00001d027403_P001 | Maize | nucleus | 38.68 | 44.34 |
| TraesCS4D01G343800.1 | Wheat | nucleus | 38.48 | 44.31 |
| KXG40319 | Sorghum | nucleus | 38.48 | 44.1 |
| TraesCS4B01G349100.1 | Wheat | nucleus | 38.48 | 44.1 |
| EES06158 | Sorghum | nucleus, plastid | 50.62 | 43.16 |
| Zm00001d048481_P001 | Maize | cytosol, mitochondrion, nucleus | 36.83 | 42.52 |
| AT1G67590.1 | Thale cress | nucleus | 27.57 | 38.62 |
| HORVU4Hr1G085140.6 | Barley | nucleus, plastid | 37.45 | 37.68 |
| AT1G30320.1 | Thale cress | nucleus, plastid | 36.63 | 34.97 |
| AT2G41870.1 | Thale cress | nucleus | 15.02 | 26.64 |
| AT1G53860.1 | Thale cress | nucleus | 20.58 | 22.62 |
| AT3G57540.1 | Thale cress | nucleus | 12.96 | 21.28 |
Protein Annotations
| MapMan:35.2 | EntrezGene:814748 | ProteinID:AAC97217.1 | ProteinID:AEC05555.1 | ProteinID:AEC05556.1 | EMBL:AF385733 |
| ProteinID:ANM62484.1 | ProteinID:ANM62485.1 | ArrayExpress:AT2G02170 | EnsemblPlantsGene:AT2G02170 | RefSeq:AT2G02170 | TAIR:AT2G02170 |
| RefSeq:AT2G02170-TAIR-G | EnsemblPlants:AT2G02170.2 | TAIR:AT2G02170.2 | EMBL:BT003022 | ncoils:Coil | GO:GO:0005575 |
| GO:GO:0005623 | GO:GO:0005886 | GO:GO:0008150 | GO:GO:0016020 | RefSeq:NP_001077869.1 | RefSeq:NP_001318180.1 |
| RefSeq:NP_001324640.1 | RefSeq:NP_027421.1 | PFAM:PF03763 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR31471 | PANTHER:PTHR31471:SF1 | UniProt:Q9ZUM1 |
| InterPro:Remorin_C | UniParc:UPI000000BE97 | SEG:seg | : | : | : |
Description
At2g02170/F5O4.6 [Source:UniProtKB/TrEMBL;Acc:Q9ZUM1]
Coordinates
chr2:-:556433..558968
Molecular Weight (calculated)
53954.6 Da
IEP (calculated)
9.702
GRAVY (calculated)
-0.800
Length
486 amino acids
Sequence
(BLAST)
(BLAST)
001: MDYERIGKTQ VTSSGGGFSP GKLRSMLLLG VDRKKNEEEE STPTMRSGSN QIDDPRVYVA SGLDDCKDVD VVSEITDCST SGIARSISLG LQEYSDYDNV
101: NEIKSVSASS VFEFQKTEKE KVNQRMPIRS FSKPAPSKWD DAQKWIASPT ANRPKTGQVQ VPGSKKGPSF GRQSSMKIVE VAEHRVVEEP DTKRIDVSQV
201: KKDMGNKFGS WEVDSYTTVD SYVKPVLMVE NSIVESATEV NLSRHDSSVA TAFAQPPSTA RSVSMRDMGT EMTPIASQEP SRNGTPIRAT TPIRSPISSE
301: PSSPGRQASA SPMSNKELSE KELQMKTRRE IMVLGTQLGK FNIAAWASKE DEDKDASTSL KTKASLQTSK SVSEARATAW EEAEKAKHMA RFRREEMKIQ
401: AWENHQKAKS EAEMKKTEVK VERIKGRAQD RLMKKLATIE RKAEEKRAAA EAKKDHQAAK TEKQAEQIRR TGKVPSLLFS CFSFCS
101: NEIKSVSASS VFEFQKTEKE KVNQRMPIRS FSKPAPSKWD DAQKWIASPT ANRPKTGQVQ VPGSKKGPSF GRQSSMKIVE VAEHRVVEEP DTKRIDVSQV
201: KKDMGNKFGS WEVDSYTTVD SYVKPVLMVE NSIVESATEV NLSRHDSSVA TAFAQPPSTA RSVSMRDMGT EMTPIASQEP SRNGTPIRAT TPIRSPISSE
301: PSSPGRQASA SPMSNKELSE KELQMKTRRE IMVLGTQLGK FNIAAWASKE DEDKDASTSL KTKASLQTSK SVSEARATAW EEAEKAKHMA RFRREEMKIQ
401: AWENHQKAKS EAEMKKTEVK VERIKGRAQD RLMKKLATIE RKAEEKRAAA EAKKDHQAAK TEKQAEQIRR TGKVPSLLFS CFSFCS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.