Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G046400.1 | Wheat | nucleus | 97.84 | 98.03 |
| TraesCS6B01G062500.1 | Wheat | nucleus | 96.66 | 96.85 |
| HORVU0Hr1G040310.2 | Barley | cytosol, mitochondrion, nucleus | 95.09 | 94.16 |
| Os02t0116800-01 | Rice | nucleus | 83.69 | 83.53 |
| EES06158 | Sorghum | nucleus, plastid | 81.53 | 72.81 |
| Zm00001d054034_P001 | Maize | nucleus | 76.03 | 70.24 |
| GSMUA_Achr5P11780_001 | Banana | cytosol | 38.11 | 60.06 |
| GSMUA_Achr11P... | Banana | nucleus | 56.39 | 58.45 |
| GSMUA_Achr1P02030_001 | Banana | nucleus | 55.6 | 57.76 |
| CDY09386 | Canola | nucleus | 44.2 | 56.11 |
| VIT_01s0010g01760.t01 | Wine grape | nucleus | 55.99 | 55.88 |
| Bra026612.1-P | Field mustard | nucleus | 44.6 | 54.7 |
| CDY15819 | Canola | nucleus | 46.76 | 53.85 |
| CDY17607 | Canola | nucleus | 46.95 | 53.83 |
| GSMUA_Achr2P10980_001 | Banana | nucleus | 43.81 | 52.97 |
| KRH58560 | Soybean | nucleus | 52.65 | 52.86 |
| KRH42459 | Soybean | nucleus | 52.85 | 52.75 |
| Bra024828.1-P | Field mustard | nucleus | 46.56 | 52.67 |
| CDY03066 | Canola | nucleus | 41.45 | 52.36 |
| AT2G02170.2 | Thale cress | nucleus | 48.53 | 50.82 |
| TraesCS4D01G343800.1 | Wheat | nucleus | 41.45 | 50.0 |
| Solyc01g008180.2.1 | Tomato | nucleus | 51.08 | 49.81 |
| GSMUA_Achr5P19220_001 | Banana | nucleus | 39.49 | 47.52 |
| TraesCS4D01G075000.1 | Wheat | nucleus | 24.75 | 35.69 |
| TraesCS5D01G047600.3 | Wheat | cytosol | 28.88 | 32.81 |
| TraesCS2D01G464900.1 | Wheat | nucleus, plastid | 31.63 | 30.43 |
| TraesCS2D01G206900.1 | Wheat | cytosol, plastid | 14.73 | 24.27 |
| TraesCS5D01G477500.1 | Wheat | nucleus | 14.15 | 23.61 |
| TraesCS7D01G432700.1 | Wheat | nucleus | 12.77 | 23.47 |
| TraesCS2D01G343900.1 | Wheat | plastid | 18.86 | 23.13 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G053500.1 | EnsemblPlantsGene:TraesCS6D01G053500 | InterPro:Remorin_C | ncoils:Coil | PANTHER:PTHR31471 | PANTHER:PTHR31471:SF1 |
| PFAM:PF03763 | SEG:seg | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr6D:+:25689498..25692976
Molecular Weight (calculated)
55762.2 Da
IEP (calculated)
6.641
GRAVY (calculated)
-0.815
Length
509 amino acids
Sequence
(BLAST)
(BLAST)
001: MDYERIEKPS FPTQGGGFSP KRLRAMLLGV ERRRKDAGAG DDDGGEPELE EEYGAVPMAS VRSDDDARRG GSMCEEYKDV DVVSTMSGSS SSLDTGSGHR
101: SRDSHPMGSR FRVPEEDSCD AESVASNFEF HKERGASARS APTAVVAPFS KPPPSKWDDA QKWIASPTTN RPGRAGGAFP RKMEKTGFGG GRLPATKVVL
201: EAMEEIDTKR IDPSQEKREI GWQKAANWAT PDPYPEVEPC SKSAPGAEST IIDSAVTLSC DSSTTLQSAT ACIPPPPTVR SVSMRDMGTE MTPIASQEPS
301: RTGTPVRATS PDCSRPTTPR RTLGINAPGA VINRGECSNA DLSEEELQMK TRREIMLLGT QLGKTSIAAW ASKKEEEKDA SLSLKTVSSD QSAQNATEVR
401: AAAWEEAEKA KYLARFKREE IKIHAWEDHQ KAKIEAEMRK IEVEVERMRA RAQDKLMSKL ASTRHTADEQ RAAAELKRDR SAARTAEQAE HIRRTGRMPP
501: SLGCWNWCS
101: SRDSHPMGSR FRVPEEDSCD AESVASNFEF HKERGASARS APTAVVAPFS KPPPSKWDDA QKWIASPTTN RPGRAGGAFP RKMEKTGFGG GRLPATKVVL
201: EAMEEIDTKR IDPSQEKREI GWQKAANWAT PDPYPEVEPC SKSAPGAEST IIDSAVTLSC DSSTTLQSAT ACIPPPPTVR SVSMRDMGTE MTPIASQEPS
301: RTGTPVRATS PDCSRPTTPR RTLGINAPGA VINRGECSNA DLSEEELQMK TRREIMLLGT QLGKTSIAAW ASKKEEEKDA SLSLKTVSSD QSAQNATEVR
401: AAAWEEAEKA KYLARFKREE IKIHAWEDHQ KAKIEAEMRK IEVEVERMRA RAQDKLMSKL ASTRHTADEQ RAAAELKRDR SAARTAEQAE HIRRTGRMPP
501: SLGCWNWCS
001: MDYERIGKTQ VTSSGGGFSP GKLRSMLLLG VDRKKNEEEE STPTMRSGSN QIDDPRVYVA SGLDDCKDVD VVSEITDCST SGIARSISLG LQEYSDYDNV
101: NEIKSVSASS VFEFQKTEKE KVNQRMPIRS FSKPAPSKWD DAQKWIASPT ANRPKTGQVQ VPGSKKGPSF GRQSSMKIVE VAEHRVVEEP DTKRIDVSQV
201: KKDMGNKFGS WEVDSYTTVD SYVKPVLMVE NSIVESATEV NLSRHDSSVA TAFAQPPSTA RSVSMRDMGT EMTPIASQEP SRNGTPIRAT TPIRSPISSE
301: PSSPGRQASA SPMSNKELSE KELQMKTRRE IMVLGTQLGK FNIAAWASKE DEDKDASTSL KTKASLQTSK SVSEARATAW EEAEKAKHMA RFRREEMKIQ
401: AWENHQKAKS EAEMKKTEVK VERIKGRAQD RLMKKLATIE RKAEEKRAAA EAKKDHQAAK TEKQAEQIRR TGKVPSLLFS CFSFCS
101: NEIKSVSASS VFEFQKTEKE KVNQRMPIRS FSKPAPSKWD DAQKWIASPT ANRPKTGQVQ VPGSKKGPSF GRQSSMKIVE VAEHRVVEEP DTKRIDVSQV
201: KKDMGNKFGS WEVDSYTTVD SYVKPVLMVE NSIVESATEV NLSRHDSSVA TAFAQPPSTA RSVSMRDMGT EMTPIASQEP SRNGTPIRAT TPIRSPISSE
301: PSSPGRQASA SPMSNKELSE KELQMKTRRE IMVLGTQLGK FNIAAWASKE DEDKDASTSL KTKASLQTSK SVSEARATAW EEAEKAKHMA RFRREEMKIQ
401: AWENHQKAKS EAEMKKTEVK VERIKGRAQD RLMKKLATIE RKAEEKRAAA EAKKDHQAAK TEKQAEQIRR TGKVPSLLFS CFSFCS
Arabidopsis Description
At2g02170/F5O4.6 [Source:UniProtKB/TrEMBL;Acc:Q9ZUM1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.