Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 1
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G363600.1 | Wheat | plastid | 99.52 | 100.0 |
| HORVU2Hr1G084090.2 | Barley | plastid | 95.18 | 94.5 |
| Os11t0616300-01 | Rice | nucleus | 74.7 | 62.88 |
| Zm00001d048829_P001 | Maize | plastid | 66.02 | 59.57 |
| PGSC0003DMT400023636 | Potato | nucleus | 33.25 | 58.97 |
| EES10116 | Sorghum | nucleus, plastid | 70.36 | 57.14 |
| GSMUA_Achr10P... | Banana | nucleus | 49.4 | 45.56 |
| VIT_09s0002g00360.t01 | Wine grape | nucleus | 45.78 | 41.67 |
| KRH47718 | Soybean | nucleus | 43.86 | 38.81 |
| KRH06283 | Soybean | cytosol | 44.1 | 38.69 |
| CDY08209 | Canola | nucleus | 38.8 | 38.42 |
| Bra040560.1-P | Field mustard | nucleus | 38.8 | 38.42 |
| CDY68168 | Canola | nucleus | 38.55 | 38.19 |
| AT1G53860.1 | Thale cress | nucleus | 40.24 | 37.78 |
| Solyc03g123590.2.1 | Tomato | nucleus | 42.41 | 37.77 |
| GSMUA_Achr2P07310_001 | Banana | nucleus | 44.82 | 37.35 |
| CDY36609 | Canola | cytosol | 40.0 | 25.82 |
| Bra039695.1-P | Field mustard | cytosol | 39.76 | 24.34 |
| TraesCS4D01G075000.1 | Wheat | nucleus | 19.52 | 22.95 |
| CDY24070 | Canola | extracellular | 39.52 | 22.4 |
| TraesCS4D01G343800.1 | Wheat | nucleus | 20.0 | 19.67 |
| TraesCS6D01G053500.1 | Wheat | nucleus | 23.13 | 18.86 |
| TraesCS7D01G432700.1 | Wheat | nucleus | 12.05 | 18.05 |
| TraesCS5D01G047600.3 | Wheat | cytosol | 19.28 | 17.86 |
| TraesCS5D01G477500.1 | Wheat | nucleus | 12.53 | 17.05 |
| TraesCS2D01G206900.1 | Wheat | cytosol, plastid | 12.29 | 16.5 |
| TraesCS2D01G464900.1 | Wheat | nucleus, plastid | 19.76 | 15.5 |
| Bra040561.1-P | Field mustard | cytosol | 1.2 | 2.11 |
Protein Annotations
| EnsemblPlants:TraesCS2D01G343900.1 | EnsemblPlantsGene:TraesCS2D01G343900 | InterPro:Remorin_C | ncoils:Coil | PANTHER:PTHR31471 | PANTHER:PTHR31471:SF3 |
| PFAM:PF03763 | SEG:seg | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr2D:+:440178995..440180917
Molecular Weight (calculated)
45536.9 Da
IEP (calculated)
8.699
GRAVY (calculated)
-0.797
Length
415 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAMARSNSS NGHGYHHEAS TTSSSSSSTS LARGRRSLEQ QVPGTPGRPL LFLTSSSSSP AHPQLVSSRR SVPSKWEDAE KWLTQSSDHR GHHHGKAASK
101: QHHIGGPAPA TARRTSLDAN ALALYTLPAE VLLKDKYTDN VEPSKESFVF RSSYCEPAKN GAAAVTCGDD DFHRRDVGTE MTPLGSSPTS RCHTPVKSTS
201: PARHNTPTGR SGPLVPYNSG SGMDISELTD CHFAKLDLGA QFDSMLVNWS SKEEEEEEVS KSLRHFEASA GDGGRACDKR VAAVTECRWE DDERAKSCIR
301: YQREEAKIQA WINLESAKAE AQSRKLEVKI QKMRSNLEEK LMKRMTSVHR RGEEWRAAAQ AQHLQQLRRA TTEHQARRVK TISHHLSGTG TGSNASCGCF
401: PCNSDNIISG NLLNY
101: QHHIGGPAPA TARRTSLDAN ALALYTLPAE VLLKDKYTDN VEPSKESFVF RSSYCEPAKN GAAAVTCGDD DFHRRDVGTE MTPLGSSPTS RCHTPVKSTS
201: PARHNTPTGR SGPLVPYNSG SGMDISELTD CHFAKLDLGA QFDSMLVNWS SKEEEEEEVS KSLRHFEASA GDGGRACDKR VAAVTECRWE DDERAKSCIR
301: YQREEAKIQA WINLESAKAE AQSRKLEVKI QKMRSNLEEK LMKRMTSVHR RGEEWRAAAQ AQHLQQLRRA TTEHQARRVK TISHHLSGTG TGSNASCGCF
401: PCNSDNIISG NLLNY
001: MDFTRNSNTK LHPQTQLLFP PNMEKNSNVS ANPFAEDSLT SRINLKETTD FIKSLPISSN QSSSSSNEMV NERRPSFSSQ KSIGEGRSNG QRRLMLMESP
101: CTPGRGVFSF SSNVSGRRRN FPSKWIDAEK WVTSSGHDSP AHSLKNNQFD GFKHQVEVVY SEKSRVTEEC FHGSVSLSPQ DLILKDKLAN EVPQILPSTE
201: GFIFKDSDKF LRYEEAQVQH RDMGTEMTPI GSVTTSRCHT PFKSSSPARH NTPSQLSGPL TETKNVIDIS EFEDKLRLSG SSTSQYCYSV TSHWNSREEE
301: EEEISKSLRH FDMESELRRS VSESKAPLWD DEDDKIKFCQ RYQREEAKIQ AWVNLENAKA EAQSRKLEVK IQKMRSNLEE KLMKRMDMVH RRAEDWRATA
401: RQQHVEQMQK AAETARKLTN RRGYLVTGRS SCGCLPCNNT CH
101: CTPGRGVFSF SSNVSGRRRN FPSKWIDAEK WVTSSGHDSP AHSLKNNQFD GFKHQVEVVY SEKSRVTEEC FHGSVSLSPQ DLILKDKLAN EVPQILPSTE
201: GFIFKDSDKF LRYEEAQVQH RDMGTEMTPI GSVTTSRCHT PFKSSSPARH NTPSQLSGPL TETKNVIDIS EFEDKLRLSG SSTSQYCYSV TSHWNSREEE
301: EEEISKSLRH FDMESELRRS VSESKAPLWD DEDDKIKFCQ RYQREEAKIQ AWVNLENAKA EAQSRKLEVK IQKMRSNLEE KLMKRMDMVH RRAEDWRATA
401: RQQHVEQMQK AAETARKLTN RRGYLVTGRS SCGCLPCNNT CH
Arabidopsis Description
At1g53860 [Source:UniProtKB/TrEMBL;Acc:Q6DBE3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.