Factsheet for Zm00001d048829_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES10116	Sorghum	nucleus, plastid	76.09	68.49
TraesCS2B01G363600.1	Wheat	plastid	59.57	66.34
TraesCS2D01G343900.1	Wheat	plastid	59.57	66.02
HORVU2Hr1G084090.2	Barley	plastid	59.35	65.31
Os11t0616300-01	Rice	nucleus	63.91	59.63
PGSC0003DMT400023636	Potato	nucleus	26.3	51.71
GSMUA_Achr10P...	Banana	nucleus	40.0	40.89
VIT_09s0002g00360.t01	Wine grape	nucleus	37.83	38.16
CDY08209	Canola	nucleus	33.48	36.75
Bra040560.1-P	Field mustard	nucleus	33.48	36.75
CDY68168	Canola	nucleus	33.26	36.52
AT1G53860.1	Thale cress	nucleus	34.78	36.2
GSMUA_Achr2P07310_001	Banana	nucleus	39.13	36.14
Solyc03g123590.2.1	Tomato	nucleus	35.65	35.19
KRH47718	Soybean	nucleus	33.91	33.26
KRH06283	Soybean	cytosol	33.91	32.98
CDY36609	Canola	cytosol	34.57	24.73
Zm00001d051005_P001	Maize	mitochondrion, nucleus	16.52	24.44
Bra039695.1-P	Field mustard	cytosol	34.57	23.45
Zm00001d050790_P003	Maize	nucleus	16.74	22.71
CDY24070	Canola	extracellular	34.35	21.58
Zm00001d041496_P001	Maize	nucleus	16.09	19.42
Zm00001d048481_P001	Maize	cytosol, mitochondrion, nucleus	17.61	19.24
Zm00001d034558_P001	Maize	nucleus	10.43	18.46
Zm00001d006626_P001	Maize	nucleus	10.43	18.39
Zm00001d027403_P001	Maize	nucleus	16.74	18.16
Zm00001d021839_P001	Maize	nucleus	11.3	17.69
Zm00001d054034_P001	Maize	nucleus	18.91	15.79
Zm00001d002274_P001	Maize	nucleus, plastid	17.17	13.98
Bra040561.1-P	Field mustard	cytosol	0.87	1.69

Protein Annotations

EnsemblPlants:Zm00001d048829_P001	EnsemblPlants:Zm00001d048829_T001	EnsemblPlantsGene:Zm00001d048829	EntrezGene:100383853	InterPro:Remorin_C	ncoils:Coil
PANTHER:PTHR31471	PANTHER:PTHR31471:SF3	PFAM:PF03763	ProteinID:AQK48972.1	SEG:seg	UniParc:UPI0004DEBC49
UniProt:A0A1D6PQA4	MapMan:35.2	:	:	:	:

Description

Remorin family protein

Coordinates

chr4:+:6038404..6041130

Molecular Weight (calculated)

49164.7 Da

IEP (calculated)

8.901

GRAVY (calculated)

-0.771

Length

460 amino acids

Sequence
(BLAST)

001: MATTLAMSSS SSNGHGRRHE ASTTSSSSSS STASAQKRRG ESQQQAAVVP ATPGPALQFL ASPAHHHNHP QTQLVAPRRS VPSKWEDAEK WLRQSSSSSG
101: SDHHLHGNAR AAFSRQRSGG LGHRGGAGGG GGDEKSAAVA VRRSVDALRD AHSLALYAAP AAEVLLKDKF TDNEEPSKES FVFRSSCCEA AEPAKGADDD
201: DDGRCQRRRD VGTETTPLGS SCHTPLKSAS PARHNTPASR SSGPLVPYAG GGGGTDISEL AGFRLAKLDL GARFGAHATL VGWSSKEEEE DDEDVSKSLR
301: HFEATVGGIA CDRRGGDCRW DDDDRAKSCI RYQREEAKIQ AWVNLESAKA EAQSRKLEVK IQKMRCNLEE KLMRRMTTVQ RRAGEWRATA RAQHLQQLRR
401: AAAHGDGDGR RLRATATSTA HHHRHLPGSS EAPSCACFPC STSTSGGGNN VVSGGLLSYY

Best Arabidopsis Sequence Match ( AT1G53860.1 )
(BLAST)

001: MDFTRNSNTK LHPQTQLLFP PNMEKNSNVS ANPFAEDSLT SRINLKETTD FIKSLPISSN QSSSSSNEMV NERRPSFSSQ KSIGEGRSNG QRRLMLMESP
101: CTPGRGVFSF SSNVSGRRRN FPSKWIDAEK WVTSSGHDSP AHSLKNNQFD GFKHQVEVVY SEKSRVTEEC FHGSVSLSPQ DLILKDKLAN EVPQILPSTE
201: GFIFKDSDKF LRYEEAQVQH RDMGTEMTPI GSVTTSRCHT PFKSSSPARH NTPSQLSGPL TETKNVIDIS EFEDKLRLSG SSTSQYCYSV TSHWNSREEE
301: EEEISKSLRH FDMESELRRS VSESKAPLWD DEDDKIKFCQ RYQREEAKIQ AWVNLENAKA EAQSRKLEVK IQKMRSNLEE KLMKRMDMVH RRAEDWRATA
401: RQQHVEQMQK AAETARKLTN RRGYLVTGRS SCGCLPCNNT CH

Arabidopsis Description

At1g53860 [Source:UniProtKB/TrEMBL;Acc:Q6DBE3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.