Factsheet for GSMUA_Achr10P25730_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plasma membrane 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400023636	Potato	nucleus	32.22	61.97
GSMUA_Achr2P07310_001	Banana	nucleus	66.67	60.24
VIT_09s0002g00360.t01	Wine grape	nucleus	55.56	54.82
TraesCS2B01G363600.1	Wheat	plastid	45.56	49.64
TraesCS2D01G343900.1	Wheat	plastid	45.56	49.4
HORVU2Hr1G084090.2	Barley	plastid	44.89	48.33
Solyc03g123590.2.1	Tomato	nucleus	49.78	48.07
KRH47718	Soybean	nucleus	49.78	47.76
KRH06283	Soybean	cytosol	49.56	47.15
AT1G53860.1	Thale cress	nucleus	42.89	43.67
CDY08209	Canola	nucleus	40.44	43.44
Bra040560.1-P	Field mustard	nucleus	40.44	43.44
CDY68168	Canola	nucleus	40.0	42.96
Os11t0616300-01	Rice	nucleus	45.33	41.38
Zm00001d048829_P001	Maize	plastid	40.89	40.0
EES10116	Sorghum	nucleus, plastid	43.78	38.55
CDY36609	Canola	cytosol	40.22	28.15
Bra039695.1-P	Field mustard	cytosol	40.0	26.55
GSMUA_Achr9P07790_001	Banana	nucleus	18.0	25.8
GSMUA_Achr5P11780_001	Banana	cytosol	18.22	25.39
CDY24070	Canola	extracellular	39.78	24.45
GSMUA_Achr3P17060_001	Banana	nucleus	18.67	24.35
GSMUA_Achr2P10980_001	Banana	nucleus	21.78	23.28
GSMUA_Achr11P...	Banana	nucleus	24.44	22.4
GSMUA_Achr1P02030_001	Banana	nucleus	24.22	22.24
GSMUA_Achr2P13770_001	Banana	cytosol, nucleus, plastid	12.67	20.36
GSMUA_Achr5P19220_001	Banana	nucleus	19.11	20.33
GSMUA_Achr6P00160_001	Banana	nucleus	12.0	19.93
GSMUA_Achr4P33120_001	Banana	nucleus	12.0	19.85
GSMUA_Achr5P26590_001	Banana	nucleus	20.22	17.88
GSMUA_Achr10P...	Banana	nucleus	20.22	16.79
Bra040561.1-P	Field mustard	cytosol	0.44	0.84

Protein Annotations

EnsemblPlants:GSMUA_Achr10P25730_001	EnsemblPlants:GSMUA_Achr10T25730_001	EnsemblPlantsGene:GSMUA_Achr10G25730_001	InterPro:Remorin_C	ncoils:Coil	PANTHER:PTHR31471
PANTHER:PTHR31471:SF3	PFAM:PF03763	SEG:seg	UniParc:UPI0002965C79	UniProt:M0RLE7	MapMan:35.2

Description

remorin C-terminal domain containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr10G25730_001]

Coordinates

chr10:-:29608994..29611990

Molecular Weight (calculated)

50114.8 Da

IEP (calculated)

8.719

GRAVY (calculated)

-0.701

Length

450 amino acids

Sequence
(BLAST)

001: MITLTAIVSI EQDSLESGSS FYCTNKQNPL ADHLSAKTWS TTTENMGDNR GLFEASVKRR REGLSAVTRR RLETPTTPGR PVFSFSPGHL PRKGVPSKWD
101: DAEKWLISSH CHESPAHVKV AVEASKFSRQ NGVIQENGDA FVGKLLRVAQ DKAPSSPNPA SNGPAMNPET NVAFSGASSD VLLKDKFTEN VESVYPNYGY
201: SEITKEGFLF KSSYFEPMKD STTALVAEIE RRDIGTEMTP LGSSTATRCH TPVKITSPAR HNTPADRSGP LVPHSTGIDI SELTDCHFAK LELSAQYDSF
301: VSNWSSREEE DEEVSKSLRH LEISGGRKSS AKSRASAWEE GQRTKSCVRY QREEAKIQAW VNLQSAKAEA QSRKLEVKIQ KMRSDLEEKL MKRMAIVHRR
401: AEEWRAAAQL QHSQQLQRLS LQAQKMKSQQ QSTRLSGETA CGCFPCNHHL

Best Arabidopsis Sequence Match ( AT1G53860.1 )
(BLAST)

001: MDFTRNSNTK LHPQTQLLFP PNMEKNSNVS ANPFAEDSLT SRINLKETTD FIKSLPISSN QSSSSSNEMV NERRPSFSSQ KSIGEGRSNG QRRLMLMESP
101: CTPGRGVFSF SSNVSGRRRN FPSKWIDAEK WVTSSGHDSP AHSLKNNQFD GFKHQVEVVY SEKSRVTEEC FHGSVSLSPQ DLILKDKLAN EVPQILPSTE
201: GFIFKDSDKF LRYEEAQVQH RDMGTEMTPI GSVTTSRCHT PFKSSSPARH NTPSQLSGPL TETKNVIDIS EFEDKLRLSG SSTSQYCYSV TSHWNSREEE
301: EEEISKSLRH FDMESELRRS VSESKAPLWD DEDDKIKFCQ RYQREEAKIQ AWVNLENAKA EAQSRKLEVK IQKMRSNLEE KLMKRMDMVH RRAEDWRATA
401: RQQHVEQMQK AAETARKLTN RRGYLVTGRS SCGCLPCNNT CH

Arabidopsis Description

At1g53860 [Source:UniProtKB/TrEMBL;Acc:Q6DBE3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.