Factsheet for Os11t0616300-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1
plasma membrane 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G363600.1	Wheat	plastid	62.88	75.06
TraesCS2D01G343900.1	Wheat	plastid	62.88	74.7
HORVU2Hr1G084090.2	Barley	plastid	62.88	74.16
EES10116	Sorghum	nucleus, plastid	71.6	69.08
Zm00001d048829_P001	Maize	plastid	59.63	63.91
PGSC0003DMT400023636	Potato	nucleus	28.8	60.68
VIT_09s0002g00360.t01	Wine grape	nucleus	44.83	48.46
GSMUA_Achr10P...	Banana	nucleus	41.38	45.33
Solyc03g123590.2.1	Tomato	nucleus	42.39	44.85
GSMUA_Achr2P07310_001	Banana	nucleus	45.23	44.78
KRH47718	Soybean	nucleus	40.77	42.86
AT1G53860.1	Thale cress	nucleus	38.34	42.76
KRH06283	Soybean	cytosol	40.77	42.49
CDY08209	Canola	nucleus	36.11	42.48
Bra040560.1-P	Field mustard	nucleus	36.11	42.48
CDY68168	Canola	nucleus	35.9	42.24
CDY36609	Canola	cytosol	37.93	29.08
Bra039695.1-P	Field mustard	cytosol	37.73	27.43
CDY24070	Canola	extracellular	37.73	25.41
Os12t0613600-01	Rice	nucleus	18.86	21.78
Os02t0602000-01	Rice	mitochondrion	14.4	20.88
Os03t0120200-01	Rice	nucleus	17.65	20.57
Os03t0808300-01	Rice	plasma membrane	11.76	20.42
Os07t0569100-01	Rice	plasma membrane	12.78	19.94
Os07t0208600-01	Rice	nucleus	10.34	19.47
Os02t0116800-01	Rice	nucleus	20.08	19.41
Os04t0620200-01	Rice	nucleus, plastid	18.05	16.73
Bra040561.1-P	Field mustard	cytosol	1.22	2.53

Protein Annotations

EnsemblPlants:Os11t0616300-01	EnsemblPlantsGene:Os11g0616300	EntrezGene:4350927	InterPro:Remorin_C	ncoils:Coil	PANTHER:PTHR31471
PANTHER:PTHR31471:SF3	PFAM:PF03763	ProteinID:ABA94743.1	ProteinID:BAF28646.1	ProteinID:BAT14869.1	RefSeq:XP_015616005.1
SEG:seg	UniParc:UPI0000681E77	UniProt:Q2R164	MapMan:35.2	:	:

Description

REMORIN 6.4Remorin, C-terminal region domain containing protein. (Os11t0616300-01)

Coordinates

chr11:-:23983327..23987001

Molecular Weight (calculated)

53664.1 Da

IEP (calculated)

9.234

GRAVY (calculated)

-0.793

Length

493 amino acids

Sequence
(BLAST)

001: MEPKSSSSSH YLQPSATLPS TRRNSFQGVG AEAGGGGGGM NPFGPTFSDP LCSLNLKETS EFVRSSFPMA TMARSNSSNG ATGNGGHGYH RETSTASSSS
101: SSSASAQRRR AEQQQQQVPA TPGRPLLFFN SSSPAHHQLV SARRSVPSKW EDAEKWVRQA SSDHHGGHHH HHGKGSKLQE EKRASAVRRS VDADVTALAL
201: YTAPAAEVFL KDKFTDNVEP SKESFVFRSS YCEPTKNTAA QAVAAGNGID HRRDIGTEMT PLGSSTTSRC HTPIKSTSPA RHNTPASRSG PLVPYAGGGG
301: GAGQDISDLA DCHFAKLDLG AQFDAMLINW SSKEEEEEEV SKSLRHFEAS VAAVGEKRGG AGDCRWEDDD RAKSCIRYQR EEAKIQAWIN LESAKAEAQS
401: RKLEVKIQKM RSNLEEKLMR RMTTVHRRAE EWRATAQAQH LQQLKRAAEQ VRRAKATSHH HHHHHLAGSN ASCGCFPCNG SNNIISGNLL NYY

Best Arabidopsis Sequence Match ( AT1G53860.1 )
(BLAST)

001: MDFTRNSNTK LHPQTQLLFP PNMEKNSNVS ANPFAEDSLT SRINLKETTD FIKSLPISSN QSSSSSNEMV NERRPSFSSQ KSIGEGRSNG QRRLMLMESP
101: CTPGRGVFSF SSNVSGRRRN FPSKWIDAEK WVTSSGHDSP AHSLKNNQFD GFKHQVEVVY SEKSRVTEEC FHGSVSLSPQ DLILKDKLAN EVPQILPSTE
201: GFIFKDSDKF LRYEEAQVQH RDMGTEMTPI GSVTTSRCHT PFKSSSPARH NTPSQLSGPL TETKNVIDIS EFEDKLRLSG SSTSQYCYSV TSHWNSREEE
301: EEEISKSLRH FDMESELRRS VSESKAPLWD DEDDKIKFCQ RYQREEAKIQ AWVNLENAKA EAQSRKLEVK IQKMRSNLEE KLMKRMDMVH RRAEDWRATA
401: RQQHVEQMQK AAETARKLTN RRGYLVTGRS SCGCLPCNNT CH

Arabidopsis Description

At1g53860 [Source:UniProtKB/TrEMBL;Acc:Q6DBE3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.