Factsheet for GSMUA_Achr2P07310_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plasma membrane 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	nucleus	60.24	66.67
PGSC0003DMT400023636	Potato	nucleus	28.92	61.54
VIT_09s0002g00360.t01	Wine grape	nucleus	55.02	60.09
KRH47718	Soybean	nucleus	48.8	51.81
KRH06283	Soybean	cytosol	48.39	50.95
Solyc03g123590.2.1	Tomato	nucleus	47.59	50.86
AT1G53860.1	Thale cress	nucleus	41.57	46.83
CDY08209	Canola	nucleus	38.76	46.06
Bra040560.1-P	Field mustard	nucleus	38.76	46.06
CDY68168	Canola	nucleus	38.55	45.82
Os11t0616300-01	Rice	nucleus	44.78	45.23
TraesCS2B01G363600.1	Wheat	plastid	37.35	45.04
TraesCS2D01G343900.1	Wheat	plastid	37.35	44.82
HORVU2Hr1G084090.2	Barley	plastid	36.95	44.02
EES10116	Sorghum	nucleus, plastid	40.16	39.14
Zm00001d048829_P001	Maize	plastid	36.14	39.13
CDY36609	Canola	cytosol	38.76	30.02
Bra039695.1-P	Field mustard	cytosol	38.15	28.02
GSMUA_Achr9P07790_001	Banana	nucleus	16.47	26.11
CDY24070	Canola	extracellular	37.95	25.82
GSMUA_Achr3P17060_001	Banana	nucleus	17.67	25.51
GSMUA_Achr5P11780_001	Banana	cytosol	15.66	24.15
GSMUA_Achr2P10980_001	Banana	nucleus	19.68	23.28
GSMUA_Achr11P...	Banana	nucleus	22.09	22.4
GSMUA_Achr2P13770_001	Banana	cytosol, nucleus, plastid	12.25	21.79
GSMUA_Achr6P00160_001	Banana	nucleus	11.85	21.77
GSMUA_Achr1P02030_001	Banana	nucleus	21.08	21.43
GSMUA_Achr4P33120_001	Banana	nucleus	11.65	21.32
GSMUA_Achr5P19220_001	Banana	nucleus	17.07	20.09
GSMUA_Achr10P...	Banana	nucleus	20.48	18.82
GSMUA_Achr5P26590_001	Banana	nucleus	19.08	18.66
Bra040561.1-P	Field mustard	cytosol	0.6	1.27

Protein Annotations

EnsemblPlants:GSMUA_Achr2P07310_001	EnsemblPlants:GSMUA_Achr2T07310_001	EnsemblPlantsGene:GSMUA_Achr2G07310_001	InterPro:Remorin_C	ncoils:Coil	PANTHER:PTHR31471
PANTHER:PTHR31471:SF3	PFAM:PF03763	SEG:seg	UniParc:UPI0002966928	UniProt:M0S5X2	MapMan:35.2

Description

remorin C-terminal domain containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr2G07310_001]

Coordinates

chr2:-:11840178..11843794

Molecular Weight (calculated)

55599.1 Da

IEP (calculated)

7.987

GRAVY (calculated)

-0.749

Length

498 amino acids

Sequence
(BLAST)

001: MQLREASEES RGSSSSMSVI TTGFSPMDSM TPSYLQASTL LPAIGRHSLD SSSYFSNKGN PFVDSFPDPL CKLNLKETSD FVKAFPMNTK CSSDNRGLLE
101: ASSQRRREGL SLMGQKRLET PSTPGKPVFS FSPGHLYRKN IPSKWDDAEK WLISSSCNES PAHVTKPTDS SSKSSRQHGI LPQKGDSFAE KQMSFAERKD
201: LSSPIPGFDG PVMSMDPIVP FSGASSEVLL KDKFTNNADQ VYPNFRYSEP SEEDFVSRNS CFGPPMEDTT TAAGICEVQR RDIGTEMTPL GSSTATRCNT
301: PIKSSSPARH NTPADRSGAL VPCNTCIDIS ELNDCHFAKL KLSAQYDPIV SNWSTREEEE EEVSRSLRHL EISSGRTSIG VSWASAWEEE ERTKSCLRYQ
401: REEAKIQAWL NLQNAKAEAQ SRKLEVKIQK MRSNLEEKLM KRMAIVHRRA EEWKATAQQQ HSQQLKRASE HSQKMKSQHS SRFPVNSTCG CFPCNNQL

Best Arabidopsis Sequence Match ( AT1G53860.1 )
(BLAST)

001: MDFTRNSNTK LHPQTQLLFP PNMEKNSNVS ANPFAEDSLT SRINLKETTD FIKSLPISSN QSSSSSNEMV NERRPSFSSQ KSIGEGRSNG QRRLMLMESP
101: CTPGRGVFSF SSNVSGRRRN FPSKWIDAEK WVTSSGHDSP AHSLKNNQFD GFKHQVEVVY SEKSRVTEEC FHGSVSLSPQ DLILKDKLAN EVPQILPSTE
201: GFIFKDSDKF LRYEEAQVQH RDMGTEMTPI GSVTTSRCHT PFKSSSPARH NTPSQLSGPL TETKNVIDIS EFEDKLRLSG SSTSQYCYSV TSHWNSREEE
301: EEEISKSLRH FDMESELRRS VSESKAPLWD DEDDKIKFCQ RYQREEAKIQ AWVNLENAKA EAQSRKLEVK IQKMRSNLEE KLMKRMDMVH RRAEDWRATA
401: RQQHVEQMQK AAETARKLTN RRGYLVTGRS SCGCLPCNNT CH

Arabidopsis Description

At1g53860 [Source:UniProtKB/TrEMBL;Acc:Q6DBE3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.