Factsheet for VIT_09s0002g00360.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400023636	Potato	nucleus	38.16	74.36
KRH47718	Soybean	nucleus	66.01	64.18
Solyc03g123590.2.1	Tomato	nucleus	65.13	63.73
KRH06283	Soybean	cytosol	65.13	62.79
GSMUA_Achr10P...	Banana	nucleus	54.82	55.56
GSMUA_Achr2P07310_001	Banana	nucleus	60.09	55.02
AT1G53860.1	Thale cress	nucleus	50.88	52.49
Bra040560.1-P	Field mustard	nucleus	45.83	49.88
CDY08209	Canola	nucleus	45.83	49.88
CDY68168	Canola	nucleus	45.83	49.88
TraesCS2B01G363600.1	Wheat	plastid	41.67	46.0
HORVU2Hr1G084090.2	Barley	plastid	42.11	45.93
TraesCS2D01G343900.1	Wheat	plastid	41.67	45.78
Os11t0616300-01	Rice	nucleus	48.46	44.83
EES10116	Sorghum	nucleus, plastid	43.2	38.55
Zm00001d048829_P001	Maize	plastid	38.16	37.83
CDY36609	Canola	cytosol	44.74	31.73
Bra039695.1-P	Field mustard	cytosol	43.86	29.5
CDY24070	Canola	extracellular	43.64	27.19
VIT_01s0010g02560.t01	Wine grape	nucleus	20.61	26.18
VIT_01s0010g01760.t01	Wine grape	nucleus	26.54	23.73
VIT_10s0003g04090.t01	Wine grape	nucleus	24.78	21.48
VIT_08s0007g08280.t01	Wine grape	nucleus	12.72	21.4
Bra040561.1-P	Field mustard	cytosol	0.88	1.69

Protein Annotations

ArrayExpress:VIT_09s0002g00360	EMBL:FN596494	EnsemblPlants:VIT_09s0002g00360.t01	EnsemblPlantsGene:VIT_09s0002g00360	InterPro:Remorin_C	ncoils:Coil
PANTHER:PTHR31471	PANTHER:PTHR31471:SF3	PFAM:PF03763	ProteinID:CBI35798	ProteinID:CBI35798.3	SEG:seg
TIGR:TC63826	unigene:Vvi.21567	UniParc:UPI0001BE49C2	UniProt:D7TZK2	MapMan:35.2	:

Description

No Description!

Coordinates

chr9:-:271420..274836

Molecular Weight (calculated)

50725.3 Da

IEP (calculated)

7.401

GRAVY (calculated)

-0.737

Length

456 amino acids

Sequence
(BLAST)

001: MDLTSPRYIQ APPLFASLGE TPLEGDTSLC GNSKGNPFAD AFSDPLCKLN LKETSERREG VSSVAQRKLE APPTPGRPVF SFSVGNLTRK SFPSKWDDAE
101: KWLISSSCHE SPAHPMKPPS DSSKVSKQCD EVKQQVEVFA EKCRVTEEKV SKVASGFPSP VALDHHNSAR PFNGVLASAD VLLKDKFTDG VDPIFPNFRY
201: SEPTKEGFLF GNSVDESMKD AATEVFHEVH HRDIGTEMTP IGSSTVSRCH TPIKSSSPAR HNTPANRSGP LALGSSNSTN TTIDISQLQE CHLAKLQLGS
301: QFDSVGSHWS SREEEEEEVS KSLRHSETGN FCRKSISEAK SASWEEEEKT KCCLRYQREE AKIQAWVNLQ KAKAEAQSRK LEVKIQKMRS NLEEKLMKRM
401: AVVHRKAEEW RASAQVQHSE QIQRAAEQAQ KMLNQHNSNF SAHSSCGCFP CNNLHH

Best Arabidopsis Sequence Match ( AT1G53860.1 )
(BLAST)

001: MDFTRNSNTK LHPQTQLLFP PNMEKNSNVS ANPFAEDSLT SRINLKETTD FIKSLPISSN QSSSSSNEMV NERRPSFSSQ KSIGEGRSNG QRRLMLMESP
101: CTPGRGVFSF SSNVSGRRRN FPSKWIDAEK WVTSSGHDSP AHSLKNNQFD GFKHQVEVVY SEKSRVTEEC FHGSVSLSPQ DLILKDKLAN EVPQILPSTE
201: GFIFKDSDKF LRYEEAQVQH RDMGTEMTPI GSVTTSRCHT PFKSSSPARH NTPSQLSGPL TETKNVIDIS EFEDKLRLSG SSTSQYCYSV TSHWNSREEE
301: EEEISKSLRH FDMESELRRS VSESKAPLWD DEDDKIKFCQ RYQREEAKIQ AWVNLENAKA EAQSRKLEVK IQKMRSNLEE KLMKRMDMVH RRAEDWRATA
401: RQQHVEQMQK AAETARKLTN RRGYLVTGRS SCGCLPCNNT CH

Arabidopsis Description

At1g53860 [Source:UniProtKB/TrEMBL;Acc:Q6DBE3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.