CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH47718	Soybean	nucleus	94.71	95.52
VIT_09s0002g00360.t01	Wine grape	nucleus	62.79	65.13
PGSC0003DMT400023636	Potato	nucleus	31.71	64.1
Solyc03g123590.2.1	Tomato	nucleus	55.81	56.65
GSMUA_Achr10P...	Banana	nucleus	47.15	49.56
AT1G53860.1	Thale cress	nucleus	46.3	49.55
GSMUA_Achr2P07310_001	Banana	nucleus	50.95	48.39
CDY08209	Canola	nucleus	40.38	45.58
Bra040560.1-P	Field mustard	nucleus	40.38	45.58
CDY68168	Canola	nucleus	39.96	45.11
TraesCS2B01G363600.1	Wheat	plastid	38.69	44.31
TraesCS2D01G343900.1	Wheat	plastid	38.69	44.1
HORVU2Hr1G084090.2	Barley	plastid	38.05	43.06
Os11t0616300-01	Rice	nucleus	42.49	40.77
EES10116	Sorghum	nucleus, plastid	39.11	36.2
Zm00001d048829_P001	Maize	plastid	32.98	33.91
CDY36609	Canola	cytosol	39.53	29.08
Bra039695.1-P	Field mustard	cytosol	38.9	27.14
KRH58560	Soybean	nucleus	27.27	25.44
KRH42459	Soybean	nucleus	27.27	25.29
CDY24070	Canola	extracellular	38.69	25.0
KRH42640	Soybean	nucleus	17.55	22.62
KRH58742	Soybean	nucleus	17.12	22.07
KRH58701	Soybean	nucleus	23.47	20.56
KRH42599	Soybean	nucleus	23.26	20.37
KRG95278	Soybean	nucleus	11.42	19.93
KRH44798	Soybean	nucleus	22.83	19.6
KRH66963	Soybean	nucleus	8.46	17.78
KRH71974	Soybean	nucleus	10.78	17.06
KRH33097	Soybean	nucleus	10.36	16.55
Bra040561.1-P	Field mustard	cytosol	0.85	1.69

Protein Annotations

EMBL:ACUP02009822	EnsemblPlants:KRH06283	EnsemblPlantsGene:GLYMA_16G013800	EntrezGene:100776089	InterPro:Remorin_C	ncoils:Coil
PANTHER:PTHR31471	PANTHER:PTHR31471:SF3	PFAM:PF03763	ProteinID:KRH06283	ProteinID:KRH06283.1	SEG:seg
UniParc:UPI000233B7AF	UniProt:K7MEL6	MapMan:35.2	:	:	:

Description

hypothetical protein

Coordinates

chr16:+:1201025..1206380

Molecular Weight (calculated)

53052.6 Da

IEP (calculated)

8.275

GRAVY (calculated)

-0.744

Length

473 amino acids

Sequence
(BLAST)

001: MDLPSHKFFQ PPSTLAPHGV ALLTESNMSM YGKSKDNPFA DDFPDPLCKL NLKETSEFVK SLPLPLPMPN GRAESRGHSV SQQRRLLDSP STPGRPVFTF
101: SSGLPRKSFP SKWDDAEKWL MSTSCHDSPA HNNTTLKVSV SDSSKITTRQ QHCGDDVVGF KQQMEGFSEK SRVTEERVSS KAVPNFPWSP SLDHHHNTLG
201: SFNGVKDIVL KDKFTDSIEP VLPNLRYLEP AKEGFLFRNQ GGGAMQDACT EVVQHRDIGT EMTPLGSSTT SRCHTPVKIS SPPRHNTPAS RSGPLALASS
301: ACTLDVIQLE ECHFSKLQLG TQYDLVPLNW SSSEEEEKEI SKSLRHNGSH KADSDCIAAA WEEEEKTKCC LRYQREEAKI QAWVNLQNAK AEARSRKLEV
401: KIQKMKSSLE EKLMKRMSVV HRKAEEWRAE ARQQHLDQIQ KATVQAQKII HKHNSQFSKP SSCGCFPCNN NHH

Best Arabidopsis Sequence Match ( AT1G53860.1 )
(BLAST)

001: MDFTRNSNTK LHPQTQLLFP PNMEKNSNVS ANPFAEDSLT SRINLKETTD FIKSLPISSN QSSSSSNEMV NERRPSFSSQ KSIGEGRSNG QRRLMLMESP
101: CTPGRGVFSF SSNVSGRRRN FPSKWIDAEK WVTSSGHDSP AHSLKNNQFD GFKHQVEVVY SEKSRVTEEC FHGSVSLSPQ DLILKDKLAN EVPQILPSTE
201: GFIFKDSDKF LRYEEAQVQH RDMGTEMTPI GSVTTSRCHT PFKSSSPARH NTPSQLSGPL TETKNVIDIS EFEDKLRLSG SSTSQYCYSV TSHWNSREEE
301: EEEISKSLRH FDMESELRRS VSESKAPLWD DEDDKIKFCQ RYQREEAKIQ AWVNLENAKA EAQSRKLEVK IQKMRSNLEE KLMKRMDMVH RRAEDWRATA
401: RQQHVEQMQK AAETARKLTN RRGYLVTGRS SCGCLPCNNT CH

Arabidopsis Description

At1g53860 [Source:UniProtKB/TrEMBL;Acc:Q6DBE3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.