Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- plasma membrane 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU6Hr1G075650.1 | |
| HORVU7Hr1G038130.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G57540.1 | HORVU6Hr1G075650.1 | AT3G47620.1 | 21798944 |
| AT3G57540.1 | HORVU7Hr1G038130.1 | AT3G47620.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G432700.1 | Wheat | nucleus | 92.81 | 93.14 |
| TraesCS7B01G342300.1 | Wheat | nucleus | 91.37 | 91.37 |
| TraesCS7A01G443500.1 | Wheat | nucleus | 89.93 | 88.03 |
| Solyc10g080240.1.1 | Tomato | cytosol | 12.23 | 68.0 |
| Os07t0208600-01 | Rice | nucleus | 58.99 | 62.6 |
| HORVU2Hr1G039030.1 | Barley | cytosol, nucleus | 47.12 | 51.57 |
| GSMUA_Achr4P33120_001 | Banana | nucleus | 46.04 | 47.06 |
| GSMUA_Achr6P00160_001 | Banana | nucleus | 45.32 | 46.49 |
| VIT_08s0007g08280.t01 | Wine grape | nucleus | 43.53 | 44.65 |
| GSMUA_Achr2P13770_001 | Banana | cytosol, nucleus, plastid | 44.6 | 44.29 |
| CDX79905 | Canola | nucleus | 40.65 | 42.01 |
| Bra004657.1-P | Field mustard | cytosol | 40.65 | 41.85 |
| CDY48774 | Canola | nucleus | 40.65 | 41.85 |
| KRG95278 | Soybean | nucleus | 40.65 | 41.7 |
| Solyc04g015520.2.1 | Tomato | nucleus | 45.32 | 41.58 |
| AT2G41870.1 | Thale cress | nucleus | 40.29 | 40.88 |
| KRH71974 | Soybean | nucleus | 43.53 | 40.47 |
| HORVU5Hr1G111130.2 | Barley | cytosol, nucleus | 48.92 | 40.24 |
| KRH33097 | Soybean | nucleus | 42.81 | 40.2 |
| CDX72021 | Canola | nucleus | 39.21 | 40.07 |
| PGSC0003DMT400070037 | Potato | nucleus | 45.32 | 39.75 |
| Bra007335.1-P | Field mustard | nucleus | 41.73 | 39.59 |
| CDY06095 | Canola | nucleus | 41.01 | 38.91 |
| AT3G57540.1 | Thale cress | nucleus | 41.37 | 38.85 |
| PGSC0003DMT400060978 | Potato | nucleus | 40.65 | 38.57 |
| HORVU5Hr1G111120.3 | Barley | cytosol | 42.81 | 38.39 |
| Solyc10g080230.1.1 | Tomato | cytosol | 20.5 | 36.08 |
| KRH66963 | Soybean | nucleus | 24.82 | 30.67 |
| HORVU4Hr1G012760.3 | Barley | nucleus | 24.46 | 19.37 |
| HORVU0Hr1G040310.2 | Barley | cytosol, mitochondrion, nucleus | 23.74 | 12.84 |
| HORVU4Hr1G085140.6 | Barley | nucleus, plastid | 21.94 | 12.63 |
| HORVU2Hr1G084090.2 | Barley | plastid | 17.99 | 11.96 |
| HORVU2Hr1G103570.7 | Barley | nucleus, plastid | 18.35 | 9.62 |
| HORVU5Hr1G009780.6 | Barley | cytosol | 15.83 | 9.09 |
Protein Annotations
| EnsemblPlants:HORVU7Hr1G100790.1 | EnsemblPlantsGene:HORVU7Hr1G100790 | InterPro:Remorin_C | ncoils:Coil | PANTHER:PTHR31471 | PANTHER:PTHR31471:SF11 |
| PFAM:PF03763 | SEG:seg | UniParc:UPI000295BE3B | UniProt:M0Y5M7 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chrchr7H:+:606342950..606344496
Molecular Weight (calculated)
29952.8 Da
IEP (calculated)
5.008
GRAVY (calculated)
-0.659
Length
278 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSSDPIDHM SVSERLQRLA TPSAPAEDDV DVDGDGDGAT FRDIHPSPAP APLRQPSWDV ASQRSLSSYS DEQFMASMGR EFNAMVDAGG GPPTDPCPGP
101: GDSGAANNDL QLARIGEHEP VPETNPLAIV ADAGRPLPLP AGPSSSCAPA AEVVEVRQVK KDEAEAKVAA WQAEEVAKIN NKFKREEVVI NGWENQQIHT
201: ATTYLSKIER KLEEERAKAT EKAQNEVARA RRKAEEKRAS AEAARGTKTA RVMELANFMK AVGRVPTKRS FFSFSSSS
101: GDSGAANNDL QLARIGEHEP VPETNPLAIV ADAGRPLPLP AGPSSSCAPA AEVVEVRQVK KDEAEAKVAA WQAEEVAKIN NKFKREEVVI NGWENQQIHT
201: ATTYLSKIER KLEEERAKAT EKAQNEVARA RRKAEEKRAS AEAARGTKTA RVMELANFMK AVGRVPTKRS FFSFSSSS
001: MLTLYGQERS PENSTTSTTD ASDRRDETPS SEIVVRDIHA MTTTTELTRP QQRGSGGGYL SPSRSIAFSD GTTSSGENFT TVSREFNALV IAGSSMDNNS
101: NGTNQSGGHR DVIRDERNEL TRIGENDDVG DHGQVPEEDS NPWAIVPDDY NNRDGSENNI VLASSGGQNR MVTTASVQRV KREEVEAKIT AWQTAKVAKI
201: NNRFKRQDAV INGWLNEQVH RANSWMKKIE RKLEDRRAKA MEKTQNKVAK AQRKAEERRA TAEGKRGTEV ARVLEVANLM RAVGRPPAKR SFFSLS
101: NGTNQSGGHR DVIRDERNEL TRIGENDDVG DHGQVPEEDS NPWAIVPDDY NNRDGSENNI VLASSGGQNR MVTTASVQRV KREEVEAKIT AWQTAKVAKI
201: NNRFKRQDAV INGWLNEQVH RANSWMKKIE RKLEDRRAKA MEKTQNKVAK AQRKAEERRA TAEGKRGTEV ARVLEVANLM RAVGRPPAKR SFFSLS
Arabidopsis Description
Remorin family protein [Source:UniProtKB/TrEMBL;Acc:Q93YN8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.