Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- plasma membrane 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400001613 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G57540.1 | PGSC0003DMT400001613 | AT3G47620.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g015520.2.1 | Tomato | nucleus | 91.8 | 96.04 |
| VIT_08s0007g08280.t01 | Wine grape | nucleus | 55.52 | 64.94 |
| PGSC0003DMT400060978 | Potato | nucleus | 56.15 | 60.75 |
| KRG95278 | Soybean | nucleus | 51.42 | 60.15 |
| KRH33097 | Soybean | nucleus | 53.0 | 56.76 |
| KRH71974 | Soybean | nucleus | 52.68 | 55.85 |
| GSMUA_Achr6P00160_001 | Banana | nucleus | 47.32 | 55.35 |
| GSMUA_Achr4P33120_001 | Banana | nucleus | 46.06 | 53.68 |
| GSMUA_Achr2P13770_001 | Banana | cytosol, nucleus, plastid | 47.0 | 53.21 |
| HORVU2Hr1G039030.1 | Barley | cytosol, nucleus | 41.96 | 52.36 |
| Zm00001d006626_P001 | Maize | nucleus | 42.27 | 51.34 |
| Zm00001d034558_P001 | Maize | nucleus | 41.96 | 51.15 |
| CDX79905 | Canola | nucleus | 43.22 | 50.93 |
| CDY48774 | Canola | nucleus | 42.9 | 50.37 |
| Bra004657.1-P | Field mustard | cytosol | 42.9 | 50.37 |
| AT2G41870.1 | Thale cress | nucleus | 43.22 | 50.0 |
| Zm00001d021839_P001 | Maize | nucleus | 45.11 | 48.64 |
| Os03t0808300-01 | Rice | plasma membrane | 43.22 | 48.24 |
| KRH66963 | Soybean | nucleus | 34.07 | 48.0 |
| CDX72021 | Canola | nucleus | 41.01 | 47.79 |
| Os07t0208600-01 | Rice | nucleus | 38.8 | 46.95 |
| Os07t0569100-01 | Rice | plasma membrane | 46.69 | 46.84 |
| Bra007335.1-P | Field mustard | nucleus | 42.9 | 46.42 |
| CDY06095 | Canola | nucleus | 42.59 | 46.08 |
| EER99573 | Sorghum | nucleus | 45.43 | 46.01 |
| TraesCS2A01G199300.1 | Wheat | nucleus | 44.8 | 45.66 |
| TraesCS2D01G206900.1 | Wheat | cytosol, plastid | 44.48 | 45.63 |
| OQU90788 | Sorghum | nucleus | 41.96 | 45.55 |
| TraesCS2B01G226600.1 | Wheat | cytosol, nucleus, plastid | 44.16 | 45.45 |
| HORVU7Hr1G100790.1 | Barley | nucleus | 39.75 | 45.32 |
| TraesCS7D01G432700.1 | Wheat | nucleus | 39.12 | 44.77 |
| TraesCS7B01G342300.1 | Wheat | nucleus | 39.12 | 44.6 |
| AT3G57540.1 | Thale cress | nucleus | 41.64 | 44.59 |
| TraesCS5D01G477500.1 | Wheat | nucleus | 42.59 | 44.26 |
| TraesCS5A01G464900.1 | Wheat | nucleus | 42.9 | 44.16 |
| TraesCS5B01G476700.1 | Wheat | nucleus | 42.59 | 44.12 |
| TraesCS7A01G443500.1 | Wheat | nucleus | 39.43 | 44.01 |
| HORVU5Hr1G111120.3 | Barley | cytosol | 39.43 | 40.32 |
| HORVU5Hr1G111130.2 | Barley | cytosol, nucleus | 42.9 | 40.24 |
| PGSC0003DMT400044982 | Potato | nucleus | 18.3 | 16.67 |
| PGSC0003DMT400023636 | Potato | nucleus | 11.99 | 16.24 |
| PGSC0003DMT400031464 | Potato | nucleus | 17.67 | 10.79 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400070037 | EnsemblPlantsGene:PGSC0003DMG400027238 | EntrezGene:102583746 | InterPro:Remorin_C | ncoils:Coil | PANTHER:PTHR31471 |
| PANTHER:PTHR31471:SF7 | PFAM:PF03763 | PGSC:PGSC0003DMG400027238 | RefSeq:XP_006350210.1 | SEG:seg | UniParc:UPI000295CB4E |
| UniProt:M1CLL8 | MapMan:35.1 | : | : | : | : |
Description
Remorin, C-terminal region [Source:PGSC_GENE;Acc:PGSC0003DMG400027238]
Coordinates
chr4:+:9834947..9839069
Molecular Weight (calculated)
35895.1 Da
IEP (calculated)
6.528
GRAVY (calculated)
-1.176
Length
317 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNDQRALVL SSNNNNRDNN HEDHQDQDQD QDQNQNQNHR DDHIRDIHTM SPPQPPVPPI MMNINRAGRR REAWETSSHR SSSLSSELGG VPSENFTTMS
101: REFNALVLAG SSTNNNDDNN NNNNNNGTSH EVEGTINNNL GRIFEEETIV EENNSLAIVA DNTNNNNNNN NYNNNNVYLN PSAPSPNNNL SEISQQGEVI
201: VHRVKKEEVE SKISAWQTAK IAKINNRFKC EDAVINGWEN EEVQKATSWM KKVERKLEEK RAKALEKMQN DIANARRKAE ERKASAEAKR GTKVARVVEL
301: ANLMRAVGRA PTKRSFF
101: REFNALVLAG SSTNNNDDNN NNNNNNGTSH EVEGTINNNL GRIFEEETIV EENNSLAIVA DNTNNNNNNN NYNNNNVYLN PSAPSPNNNL SEISQQGEVI
201: VHRVKKEEVE SKISAWQTAK IAKINNRFKC EDAVINGWEN EEVQKATSWM KKVERKLEEK RAKALEKMQN DIANARRKAE ERKASAEAKR GTKVARVVEL
301: ANLMRAVGRA PTKRSFF
001: MLTLYHQERS PDATSNDRDE TPETVVREVH ALTPAPEDNS RTMTATLPPP PAFRGYFSPP RSATTMSEGE NFTTISREFN ALVIAGSSME NNELMTRDVT
101: QREDERQDEL MRIHEDTDHE EETNPLAIVP DQYPGSGLDP GSDNGPGQSR VGSTVQRVKR EEVEAKITAW QTAKLAKINN RFKREDAVIN GWFNEQVNKA
201: NSWMKKIERK LEERKAKAME KTQNNVAKAQ RKAEERRATA EAKRGTEVAK VVEVANLMRA LGRPPAKRSF FSFS
101: QREDERQDEL MRIHEDTDHE EETNPLAIVP DQYPGSGLDP GSDNGPGQSR VGSTVQRVKR EEVEAKITAW QTAKLAKINN RFKREDAVIN GWFNEQVNKA
201: NSWMKKIERK LEERKAKAME KTQNNVAKAQ RKAEERRATA EAKRGTEVAK VVEVANLMRA LGRPPAKRSF FSFS
Arabidopsis Description
Putative DNA binding protein [Source:UniProtKB/TrEMBL;Acc:P93758]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.