Factsheet for Solyc08g045640.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 4
plastid 1
extracellular 1
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400031464	Potato	nucleus	75.51	71.87
VIT_10s0003g04090.t01	Wine grape	nucleus	58.7	55.13
KRH58701	Soybean	nucleus	55.47	50.74
KRH42599	Soybean	nucleus	54.66	50.0
KRH44798	Soybean	nucleus	54.45	48.82
CDY09599	Canola	nucleus	46.15	47.9
CDY26269	Canola	nucleus	45.75	46.6
AT1G30320.1	Thale cress	nucleus, plastid	47.98	46.56
Bra032380.1-P	Field mustard	nucleus	45.55	46.39
CDY12047	Canola	nucleus	45.75	45.2
CDX90244	Canola	nucleus	45.55	45.0
Bra010777.1-P	Field mustard	nucleus	47.98	43.97
Solyc10g080240.1.1	Tomato	cytosol	4.25	42.0
Zm00001d041496_P001	Maize	nucleus	29.55	38.32
Os12t0613600-01	Rice	nucleus	32.39	37.47
GSMUA_Achr10P...	Banana	nucleus	40.89	37.27
Os04t0620200-01	Rice	nucleus, plastid	39.47	36.65
GSMUA_Achr5P26590_001	Banana	nucleus	37.04	35.95
EES11442	Sorghum	nucleus, plastid	38.26	35.46
KXG23993	Sorghum	nucleus	32.79	35.22
TraesCS2A01G464000.1	Wheat	nucleus, plastid	37.04	34.79
Solyc01g008180.2.1	Tomato	nucleus	36.44	34.48
Solyc05g014710.2.1	Tomato	nucleus	24.29	34.29
TraesCS2B01G485700.1	Wheat	nucleus, plastid	36.64	34.28
TraesCS5B01G041700.1	Wheat	mitochondrion, nucleus	32.59	34.18
TraesCS5D01G047600.3	Wheat	cytosol	30.97	34.15
TraesCS2D01G464900.1	Wheat	nucleus, plastid	36.44	34.03
TraesCS5A01G040500.1	Wheat	nucleus	30.57	33.63
Zm00001d002274_P001	Maize	nucleus, plastid	37.65	32.92
HORVU2Hr1G103570.7	Barley	nucleus, plastid	35.22	32.83
HORVU5Hr1G009780.6	Barley	cytosol	27.33	27.89
Solyc03g123590.2.1	Tomato	nucleus	19.43	20.6
Solyc10g080230.1.1	Tomato	cytosol	5.47	17.09
Solyc04g015520.2.1	Tomato	nucleus	9.92	16.17

Protein Annotations

EnsemblPlants:Solyc08g045640.2.1	EnsemblPlantsGene:Solyc08g045640.2	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0016020
InterPro:Remorin_C	ncoils:Coil	PANTHER:PTHR31471	PANTHER:PTHR31471:SF17	PFAM:PF03763	SEG:seg
UniParc:UPI000276C475	UniProt:K4CKC0	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr8:-:17804102..17806882

Molecular Weight (calculated)

56293.2 Da

IEP (calculated)

10.189

GRAVY (calculated)

-1.013

Length

494 amino acids

Sequence
(BLAST)

001: MKSMMVGQRS KNRRPPNIIN FATPISIFKT KQNKKDCAVS NFTFRERRRE NYFFFLSPFH SHTDTVGGWF RRKEDLMEYE RIHKVQTGII SPSKLRMKVI
101: GHQQQQKKTK QGSNTNSSTT SPVRRLHQDS EFVNTSLLAA QTQEQYCNYE GRENGGNCSS VHPVKGCEDD YDSTSSFEFH KGERSSMQQH SRSFSRPMSS
201: KWNDAEKWII NRQPNYHSNK IQLHNRGATT SMVEKVDFAP ETKDLTEVDS SCLTEDITVG PAIRSVSMRD RGTEMTPIPS QEPSTTATPV GATTPLRSPT
301: SSIPSTPRRG QPAPTPTDNY IDNASQTSTE NNKRELSEEE LKMKTRKEIV ALGVQLGKMN IAAWASKDDK NKSKADAERM EYAKRAAAWE EVEKSKDTAR
401: YKREEIKIQA WESQHKAKLE GELRKIEAQV EQMRAQAQAK MVKKIAMARQ KSEEKRAAAE ARRNQQAGKT TEQVQYIRQT GRLPSSSFTC CGWL

Best Arabidopsis Sequence Match ( AT1G30320.1 )
(BLAST)

001: MDYERIQKVQ KSIISPTKLR MKLMGPLNNM KREGSKSNSN SSRTSPSRLQ IPDDSEFSKN SLLASNSYSD DDVAATTTDI EVAKLPNEPV LYPTENDNQG
101: SKDRCEGVVP RENDQPRLQQ FRKGDLNMAS PHIMRPQEDE NLDYDSNASS SSFEFHRARG ERSNQNHGSR GYPSRQMPSK WNDAEKWIMS RQNMVMRKNG
201: QGNRIPVRIV PDNAGYEHNK SRMDLCQSSQ VDGFEKFPNV VPSAPHPILT QEYGGDSLID QSTQSNDLAD SSHDHTTGGP AIRSVCMRDM GTEMTPIPSQ
301: EPSRSVTPVG ATTPLRSPTS SLPSTPRGGQ PEESSMSKNT RRELSEEEEK AKTRREIVAL GVQLGKMNIA AWASKEEEEN KKNNGDAEEA QKIEFEKRAT
401: AWEEAEKSKH NARYKREEIR IQAWESQEKA KLEAEMRRIE AKVEQMKAEA EAKIMKKIAL AKQRSEEKRA LAEARKTRDA EKAVAEAQYI RETGRIPASS
501: YKICCGWFS

Arabidopsis Description

Remorin family protein [Source:UniProtKB/TrEMBL;Acc:Q9C8G3]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.