Factsheet for PGSC0003DMT400019607

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001367
PGSC0003DMT400004371
PGSC0003DMT400006337
PGSC0003DMT400008970
PGSC0003DMT400020094
PGSC0003DMT400060978
PGSC0003DMT400070037
PGSC0003DMT400086234

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G16120.1	PGSC0003DMT400086234	AT2G24550.1	21798944
AT3G16120.1	PGSC0003DMT400006337	AT3G29320.1	21798944
AT3G16120.1	PGSC0003DMT400008970	AT3G29320.1	21798944
AT3G16120.1	PGSC0003DMT400020094	AT3G29320.1	21798944
AT3G16120.1	PGSC0003DMT400004371	AT3G53320.1	21798944
AT3G16120.1	PGSC0003DMT400060978	AT3G57540.1	21798944
AT3G16120.1	PGSC0003DMT400070037	AT3G57540.1	21798944
AT3G16120.1	PGSC0003DMT400001367	AT5G14910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g044240.1.1	Tomato	cytosol	98.94	98.94
VIT_09s0002g04280.t01	Wine grape	cytosol	88.3	87.37
PGSC0003DMT400006527	Potato	cytosol	87.23	87.23
GSMUA_Achr2P19900_001	Banana	cytosol	84.04	84.95
KRH09878	Soybean	cytosol	84.04	83.16
KRH23441	Soybean	cytosol	82.98	82.11
CDY02551	Canola	cytosol	81.91	81.91
AT1G52245.1	Thale cress	cytosol	81.91	81.91
Bra014318.1-P	Field mustard	cytosol	81.91	81.91
Bra018957.1-P	Field mustard	cytosol	80.85	80.85
GSMUA_Achr10P...	Banana	cytosol	79.79	80.65
CDX97722	Canola	cytosol	76.6	77.42
Bra027190.1-P	Field mustard	cytosol	76.6	77.42
GSMUA_Achr7P14400_001	Banana	cytosol	76.6	77.42
AT3G16120.1	Thale cress	cytosol	76.6	77.42
CDY30135	Canola	cytosol	75.53	76.34
GSMUA_Achr7P25190_001	Banana	cytosol	74.47	75.27
KXG33416	Sorghum	cytosol	72.34	73.12
Zm00001d043386_P001	Maize	cytosol	71.28	72.04
GSMUA_Achr10P...	Banana	cytosol	75.53	69.61
TraesCS3D01G296300.1	Wheat	cytosol	72.34	68.69
TraesCS3B01G330900.1	Wheat	cytosol	71.28	67.68
TraesCS3A01G305600.1	Wheat	cytosol	71.28	67.68
Os02t0269200-01	Rice	cytosol	70.21	66.67
TraesCS1D01G203800.1	Wheat	cytosol	70.21	66.67
TraesCS2A01G245600.1	Wheat	cytosol	69.15	65.66
TraesCS1B01G110900.1	Wheat	cytosol	69.15	65.66
HORVU3Hr1G073190.1	Barley	cytosol	72.34	65.38
TraesCS2B01G143000.1	Wheat	cytosol	68.09	64.65
EES06648	Sorghum	cytosol	67.02	63.64
TraesCS2B01G427400.1	Wheat	cytosol	65.96	62.63
TraesCS5B01G340700.1	Wheat	cytosol	65.96	62.63
TraesCS7D01G056400.1	Wheat	cytosol	67.02	60.0
TraesCS7A01G061500.1	Wheat	cytosol	67.02	60.0
TraesCS4A01G427300.1	Wheat	cytosol	67.02	60.0
TraesCS7A01G284100.1	Wheat	cytosol, plastid	54.26	58.62
CDY47528	Canola	cytosol	74.47	53.85
Zm00001d016016_P001	Maize	cytosol	67.02	52.5
TraesCS4A01G428300.1	Wheat	cytosol	67.02	47.01
PGSC0003DMT400049549	Potato	cytosol	52.13	40.5
HORVU7Hr1G011400.2	Barley	plastid	68.09	39.51
PGSC0003DMT400029467	Potato	extracellular	37.23	29.41
PGSC0003DMT400032411	Potato	cytosol, mitochondrion, nucleus, plastid	41.49	26.53
PGSC0003DMT400081918	Potato	cytosol	35.11	25.38
PGSC0003DMT400053284	Potato	cytosol	41.49	16.88
PGSC0003DMT400062841	Potato	plastid	39.36	13.55
PGSC0003DMT400083122	Potato	cytosol	37.23	12.82

Protein Annotations

Gene3D:3.30.740.10	MapMan:35.1	InterPro:DLC_sf	InterPro:Dynein_light_chain_typ-1/2	GO:GO:0003674	GO:GO:0003774
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856
GO:GO:0005874	GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016787	GO:GO:0030286
InterPro:IPR037177	UniProt:M1ACB4	PFAM:PF01221	EnsemblPlantsGene:PGSC0003DMG400007577	PGSC:PGSC0003DMG400007577	EnsemblPlants:PGSC0003DMT400019607
PANTHER:PTHR11886	PANTHER:PTHR11886:SF47	SMART:SM01375	SUPFAM:SSF54648	UniParc:UPI0002949EAC	:

Description

Cytoplasmic dynein light chain [Source:PGSC_GENE;Acc:PGSC0003DMG400007577]

Coordinates

chr12:+:50606709..50607958

Molecular Weight (calculated)

10486.7 Da

IEP (calculated)

6.495

GRAVY (calculated)

0.100

Length

94 amino acids

Sequence
(BLAST)

1: MLEGKALIED TDMPVKMQIQ AMSYASQALD LYDVLDCKSI AAHIKKEFDK KYGGGWQCVV GSNFGCFFTH TKGTFIFFTL ETLNFLIFKG ASSP

Best Arabidopsis Sequence Match ( AT1G52245.1 )
(BLAST)

1: MLEGKAMVED SDMPVKMQMQ AMAFASQALD LFDVFDCKSI AGHIKKEFDE RYGSGWQCVV GSNFGCFFTH SKGTFIYFQL ETLKFLIFKG ASTP

Arabidopsis Description

At1g52250 [Source:UniProtKB/TrEMBL;Acc:Q9M810]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.