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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 4
  • plastid 2
  • nucleus 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:cytosol
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:nucleus, plastid
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX70580
CDX72021
CDX73561
CDX76805
CDX78168
CDX78599
CDX85266
CDX85578
CDX86372
CDX91016
CDY04076
CDY06095
CDY19576
CDY20324
CDY27538
CDY37312
CDY38599
CDY38600
CDY44394
CDY45582
CDY50073
CDY68667

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G16120.1 CDX76805 AT2G24550.1 21798944
AT3G16120.1 CDY20324 AT2G24550.1 21798944
AT3G16120.1 CDY45582 AT2G24550.1 21798944
AT3G16120.1 CDY68667 AT2G24550.1 21798944
AT3G16120.1 CDY19576 AT3G21175.1 21798944
AT3G16120.1 CDY27538 AT3G21175.1 21798944
AT3G16120.1 CDY37312 AT3G21175.1 21798944
AT3G16120.1 CDY50073 AT3G21175.1 21798944
AT3G16120.1 CDX85266 AT3G29320.1 21798944
AT3G16120.1 CDX86372 AT3G29320.1 21798944
AT3G16120.1 CDY04076 AT3G29320.1 21798944
AT3G16120.1 CDY38599 AT3G29320.1 21798944
AT3G16120.1 CDY38600 AT3G29320.1 21798944
AT3G16120.1 CDY44394 AT3G29320.1 21798944
AT3G16120.1 CDX73561 AT3G53320.1 21798944
AT3G16120.1 CDX78168 AT3G53320.1 21798944
AT3G16120.1 CDX72021 AT3G57540.1 21798944
AT3G16120.1 CDY06095 AT3G57540.1 21798944
AT3G16120.1 CDX70580 AT5G14910.1 21798944
AT3G16120.1 CDX78599 AT5G14910.1 21798944
AT3G16120.1 CDX85578 AT5G14910.1 21798944
AT3G16120.1 CDX91016 AT5G14910.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra027190.1-P Field mustard cytosol 100.0 100.0
CDY30135 Canola cytosol 98.92 98.92
AT3G16120.1 Thale cress cytosol 90.32 90.32
CDY02551 Canola cytosol 80.65 79.79
Solyc12g044240.1.1 Tomato cytosol 78.49 77.66
GSMUA_Achr2P19900_001 Banana cytosol 77.42 77.42
PGSC0003DMT400019607 Potato cytosol 77.42 76.6
VIT_09s0002g04280.t01 Wine grape cytosol 76.34 74.74
KRH09878 Soybean cytosol 76.34 74.74
Solyc03g120690.2.1 Tomato cytosol 75.27 74.47
GSMUA_Achr10P... Banana cytosol 74.19 74.19
KRH23441 Soybean cytosol 75.27 73.68
PGSC0003DMT400006527 Potato cytosol 74.19 73.4
GSMUA_Achr7P25190_001 Banana cytosol 72.04 72.04
GSMUA_Achr7P14400_001 Banana cytosol 72.04 72.04
KXG33416 Sorghum cytosol 69.89 69.89
Zm00001d043386_P001 Maize cytosol 68.82 68.82
Os02t0269200-01 Rice cytosol 69.89 65.66
TraesCS3D01G296300.1 Wheat cytosol 69.89 65.66
GSMUA_Achr10P... Banana cytosol 70.97 64.71
TraesCS3A01G305600.1 Wheat cytosol 68.82 64.65
TraesCS3B01G330900.1 Wheat cytosol 68.82 64.65
TraesCS1D01G203800.1 Wheat cytosol 67.74 63.64
EES06648 Sorghum cytosol 67.74 63.64
TraesCS7A01G061500.1 Wheat cytosol 70.97 62.86
TraesCS1B01G110900.1 Wheat cytosol 66.67 62.63
TraesCS7D01G056400.1 Wheat cytosol 69.89 61.9
TraesCS4A01G427300.1 Wheat cytosol 69.89 61.9
TraesCS2A01G245600.1 Wheat cytosol 65.59 61.62
TraesCS2B01G143000.1 Wheat cytosol 65.59 61.62
HORVU3Hr1G073190.1 Barley cytosol 68.82 61.54
TraesCS5B01G340700.1 Wheat cytosol 64.52 60.61
TraesCS2B01G427400.1 Wheat cytosol 63.44 59.6
TraesCS7A01G284100.1 Wheat cytosol, plastid 50.54 54.02
Zm00001d016016_P001 Maize cytosol 68.82 53.33
CDY47528 Canola cytosol 72.04 51.54
TraesCS4A01G428300.1 Wheat cytosol 69.89 48.51
CDX89255 Canola cytosol 51.61 47.52
CDY29301 Canola cytosol 51.61 47.52
HORVU7Hr1G011400.2 Barley plastid 69.89 40.12
CDY21425 Canola cytosol 38.71 27.69
CDX90554 Canola cytosol 35.48 27.27
CDY09728 Canola cytosol 35.48 27.27
CDY57865 Canola cytosol 35.48 27.05
CDY04736 Canola cytosol 37.63 26.92
CDY24919 Canola cytosol 35.48 26.61
CDX91705 Canola cytosol 36.56 26.15
CDY41457 Canola cytosol 36.56 26.15
CDY12479 Canola cytosol 37.63 25.55
CDY25775 Canola cytosol 37.63 25.55
CDX88858 Canola nucleus, plastid 44.09 19.62
CDX70914 Canola nucleus 44.09 19.43
CDY45106 Canola nucleus 43.01 19.05
Protein Annotations
Gene3D:3.30.740.10MapMan:35.1GO:A0A078E9L9EnsemblPlants:CDX97722ProteinID:CDX97722ProteinID:CDX97722.1
InterPro:DLC_sfInterPro:Dynein_light_chain_typ-1/2GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005856
GO:GO:0007017GO:GO:0008150GO:GO:0009987GO:GO:0030286EnsemblPlantsGene:GSBRNA2T00104977001InterPro:IPR037177
PFAM:PF01221PANTHER:PTHR11886PANTHER:PTHR11886:SF47SMART:SM01375SUPFAM:SSF54648UniParc:UPI000254792B
Description
BnaA05g23570D
Coordinates
chrLK031900:+:1196966..1197530
Molecular Weight (calculated)
10416.6 Da
IEP (calculated)
6.767
GRAVY (calculated)
0.022
Length
93 amino acids
Sequence
(BLAST)
1: MLEGKAKVED TDMPVKMQMK ALNIASQSLD LFDVSDCQPI AAHIKKEFDE RYGSGWQCVV GSNFGCFFTH SKGTFIYFHL GTLNFLIFKG ATL
Best Arabidopsis Sequence Match ( AT3G16120.1 )
(BLAST)
1: MLEGKAKVEE TDMPVKMQMQ AMKIASQSLD LFDVFDSISI AAHIKKEFDE RYGSGWQCVV GTNFGCFFTH SKGTFIYFHL GTLNFLIFKG ATL
Arabidopsis Description
At3g16120 [Source:UniProtKB/TrEMBL;Acc:Q9LW74]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.