CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
extracellular 6
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400008970	Potato	extracellular, plastid	57.02	32.02
CDY04076	Canola	plastid	64.91	7.97
CDX86372	Canola	plastid	66.67	7.92
AT3G29320.1	Thale cress	plastid	66.67	7.9
CDX86109	Canola	cytosol	57.89	7.85
CDX99080	Canola	cytosol	57.89	7.85
CDY44394	Canola	plastid	64.04	7.82
CDX85266	Canola	plastid	64.91	7.72
Solyc03g065340.2.1	Tomato	plastid	58.77	6.94
KRG93626	Soybean	plastid	58.77	6.83
VIT_14s0108g01560.t01	Wine grape	plastid	58.77	6.82
KRH18405	Soybean	endoplasmic reticulum, plastid	57.02	6.65
CDY38599	Canola	cytosol	2.63	0.97
PGSC0003DMT400006337	Potato	cytosol	0.0	0.0
PGSC0003DMT400020094	Potato	cytosol	0.0	0.0

Protein Annotations

KEGG:00500+2.4.1.1	Gene3D:3.40.50.2000	MapMan:35.1	GO:A0A078HJG6	UniProt:A0A078HJG6	EnsemblPlants:CDY38600
ProteinID:CDY38600	ProteinID:CDY38600.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004645	GO:GO:0005575
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0008184	GO:GO:0016020	GO:GO:0016021
GO:GO:0016740	GO:GO:0016757	GO:GO:0102250	GO:GO:0102499	EnsemblPlantsGene:GSBRNA2T00066286001	InterPro:Glyco_trans_35
PFAM:PF00343	PANTHER:PTHR11468	PANTHER:PTHR11468:SF8	MetaCyc:PWY-5941	MetaCyc:PWY-6731	MetaCyc:PWY-6737
MetaCyc:PWY-7238	SUPFAM:SSF53756	TMHMM:TMhelix	UniParc:UPI0004EEEA97	:	:

Description

BnaC06g30230DAlpha-1,4 glucan phosphorylase [Source:UniProtKB/TrEMBL;Acc:A0A078HJG6]

Coordinates

chrLK032427:-:215045..215532

Molecular Weight (calculated)

12794.5 Da

IEP (calculated)

7.330

GRAVY (calculated)

0.316

Length

114 amino acids

Sequence
(BLAST)

001: MLNAKQAYYF VYGVFALKVS TFLFVLNLVY YVTILSLSYA DALKRLGFDL ESVASHEPDP ALGNGGLGRL ASCFLVSMAT LNYPAWGYVL RYKYGLFKQI
101: ITKDGQEEAA ENWL

Best Arabidopsis Sequence Match ( AT3G29320.1 )
(BLAST)

001: MDTMRISGVS TGAEVLIQCN SLSSLVSRRC DDGKWRTRMF PARNRDLRPS PTRRSFLSVK SISSEPKAKV TDAVLDSEQE VFISSMNPFA PDAASVASSI
101: KYHAEFTPLF SPEKFELPKA FFATAQSVRD ALIMNWNATY EYYNRVNVKQ AYYLSMEFLQ GRALSNAVGN LGLNSAYGDA LKRLGFDLES VASQEPDPAL
201: GNGGLGRLAS CFLDSMATLN YPAWGYGLRY KYGLFKQRIT KDGQEEAAED WLELSNPWEI VRNDVSYPIK FYGKVVFGSD GKKRWIGGED IVAVAYDVPI
301: PGYKTKTTIN LRLWSTKAPS EDFDLSSYNS GKHTEAAEAL FNAEKICFVL YPGDESTEGK ALRLKQQYTL CSASLQDIVA RFETRSGGNV NWEEFPEKVA
401: VQMNDTHPTL CIPELMRILM DLKGLSWEDA WKITQRTVAY TNHTVLPEAL EKWSLELMEK LLPRHVEIIE KIDEELVRTI VSEYGTADPD LLEEKLKAMR
501: ILENVELPSA FADVIVKPVN KPVTAKDAQN GVKTEQEEEK TAGEEEEDEV IPEPTVEPPK MVRMANLAVV GGHAVNGVAE IHSEIVKQDV FNDFVQLWPE
601: KFQNKTNGVT PRRWIRFCNP YLSDIITNWI GTEDWVLNTE KVAELRKFAD NEDLQSEWRA AKKKNKLKVV SLIKERTGYT VSPDAMFDIQ IKRIHEYKRQ
701: LLNILGIVYR YKKMKEMSAS EREKAFVPRV CIFGGKAFAT YVQAKRIVKF ITDVASTINH DPEIGDLLKV IFVPDYNVSV AELLIPASEL SQHISTAGME
801: ASGTSNMKFS MNGCVLIGTL DGANVEIREE VGEENFFLFG AKADQIVNLR KERAEGKFVP DPTFEEVKKF VGSGVFGSNS YDELIGSLEG NEGFGRADYF
901: LVGKDFPSYI ECQEKVDEAY RDQKRWTRMS IMNTAGSFKF SSDRTIHEYA KDIWNIKQVE LP

Arabidopsis Description

PHS1Alpha-glucan phosphorylase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIB2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.