Factsheet for PGSC0003DMT400008970

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular

Predictor Summary:

extracellular 4
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
plastid 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plastid
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
iPSORT:	mitochondrion
MultiLoc:	extracellular
Plant-mPloc:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY38600	Canola	extracellular	32.02	57.02
Solyc03g065340.2.1	Tomato	plastid	97.04	20.39
VIT_14s0108g01560.t01	Wine grape	plastid	85.22	17.62
KRG93626	Soybean	plastid	84.24	17.43
KRH18405	Soybean	endoplasmic reticulum, plastid	83.74	17.38
Bra033098.1-P	Field mustard	plastid	79.31	17.26
CDY44394	Canola	plastid	78.82	17.15
CDY04076	Canola	plastid	78.33	17.13
CDX86372	Canola	plastid	80.3	16.98
Bra025392.1-P	Field mustard	plastid	80.3	16.98
CDX85266	Canola	plastid	79.8	16.89
AT3G29320.1	Thale cress	plastid	79.31	16.74
PGSC0003DMT400072963	Potato	cytosol, extracellular, plastid	76.35	15.9
PGSC0003DMT400081273	Potato	cytosol, plastid	50.74	10.25
CDY38599	Canola	cytosol	11.33	7.47
PGSC0003DMT400006337	Potato	cytosol	0.0	0.0
PGSC0003DMT400020094	Potato	cytosol	0.0	0.0

Protein Annotations

KEGG:00500+2.4.1.1	Gene3D:3.40.50.2000	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004645
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0008184	GO:GO:0009501	GO:GO:0009507
GO:GO:0009536	GO:GO:0016740	GO:GO:0016757	GO:GO:0030170	GO:GO:0042802	GO:GO:0102250
GO:GO:0102499	InterPro:Glyco_trans_35	UniProt:M0ZVD2	PFAM:PF00343	EnsemblPlantsGene:PGSC0003DMG400003495	PGSC:PGSC0003DMG400003495
EnsemblPlants:PGSC0003DMT400008970	PANTHER:PTHR11468	PANTHER:PTHR11468:SF8	SUPFAM:SSF53756	UniParc:UPI0002948368	SEG:seg

Description

Alpha-1,4 glucan phosphorylase L-1 isozyme, chloroplastic/amyloplastic [Source:PGSC_GENE;Acc:PGSC0003DMG400003495]

Coordinates

chr00:-:40931583..40932805

Molecular Weight (calculated)

22467.5 Da

IEP (calculated)

5.058

GRAVY (calculated)

-0.271

Length

203 amino acids

Sequence
(BLAST)

001: MKQAYYLSME FLQGRALLNA IGNLELTGAF AEALKNLGHN LENVASQEPD AALGNGGLGR LASCFLDSLA TLNYPAWGYG LRYKYGLFKQ RITKDGQEEV
101: AEDWLEIGSP WEVVRNDVSY PIKFYGKVST GSDGKRYWIG GEDIKAVAYD VPIPGYKTRT TISLRLWSTQ VPSADFDLSA FNAGEHTKAC EAQANAEKVY
201: LIY

Best Arabidopsis Sequence Match ( AT3G29320.1 )
(BLAST)

001: MDTMRISGVS TGAEVLIQCN SLSSLVSRRC DDGKWRTRMF PARNRDLRPS PTRRSFLSVK SISSEPKAKV TDAVLDSEQE VFISSMNPFA PDAASVASSI
101: KYHAEFTPLF SPEKFELPKA FFATAQSVRD ALIMNWNATY EYYNRVNVKQ AYYLSMEFLQ GRALSNAVGN LGLNSAYGDA LKRLGFDLES VASQEPDPAL
201: GNGGLGRLAS CFLDSMATLN YPAWGYGLRY KYGLFKQRIT KDGQEEAAED WLELSNPWEI VRNDVSYPIK FYGKVVFGSD GKKRWIGGED IVAVAYDVPI
301: PGYKTKTTIN LRLWSTKAPS EDFDLSSYNS GKHTEAAEAL FNAEKICFVL YPGDESTEGK ALRLKQQYTL CSASLQDIVA RFETRSGGNV NWEEFPEKVA
401: VQMNDTHPTL CIPELMRILM DLKGLSWEDA WKITQRTVAY TNHTVLPEAL EKWSLELMEK LLPRHVEIIE KIDEELVRTI VSEYGTADPD LLEEKLKAMR
501: ILENVELPSA FADVIVKPVN KPVTAKDAQN GVKTEQEEEK TAGEEEEDEV IPEPTVEPPK MVRMANLAVV GGHAVNGVAE IHSEIVKQDV FNDFVQLWPE
601: KFQNKTNGVT PRRWIRFCNP YLSDIITNWI GTEDWVLNTE KVAELRKFAD NEDLQSEWRA AKKKNKLKVV SLIKERTGYT VSPDAMFDIQ IKRIHEYKRQ
701: LLNILGIVYR YKKMKEMSAS EREKAFVPRV CIFGGKAFAT YVQAKRIVKF ITDVASTINH DPEIGDLLKV IFVPDYNVSV AELLIPASEL SQHISTAGME
801: ASGTSNMKFS MNGCVLIGTL DGANVEIREE VGEENFFLFG AKADQIVNLR KERAEGKFVP DPTFEEVKKF VGSGVFGSNS YDELIGSLEG NEGFGRADYF
901: LVGKDFPSYI ECQEKVDEAY RDQKRWTRMS IMNTAGSFKF SSDRTIHEYA KDIWNIKQVE LP

Arabidopsis Description

PHS1Alpha-glucan phosphorylase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIB2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.