Factsheet for Solyc03g065340.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
plastid: 26371478
extracellular: 29876421

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400008970	Potato	extracellular, plastid	20.39	97.04
PGSC0003DMT400020094	Potato	cytosol	38.3	89.37
PGSC0003DMT400006337	Potato	cytosol	16.77	83.51
VIT_14s0108g01560.t01	Wine grape	plastid	75.57	74.34
KRG93626	Soybean	plastid	75.05	73.9
KRH18405	Soybean	endoplasmic reticulum, plastid	74.33	73.42
Bra033098.1-P	Field mustard	plastid	70.81	73.31
CDY44394	Canola	plastid	70.7	73.2
CDY04076	Canola	plastid	70.29	73.17
CDX86372	Canola	plastid	72.57	73.02
Bra025392.1-P	Field mustard	plastid	72.57	73.02
CDX85266	Canola	plastid	72.05	72.58
AT3G29320.1	Thale cress	plastid	71.74	72.04
Solyc05g012510.2.1	Tomato	plastid	69.46	69.39
Solyc09g031970.2.1	Tomato	cytosol, nucleus, plastid	53.73	62.01
CDY38600	Canola	extracellular	6.94	58.77
CDY38599	Canola	cytosol	17.81	55.84
Solyc02g077680.2.1	Tomato	plastid	42.24	40.52

Protein Annotations

KEGG:00500+2.4.1.1	MapMan:3.2.3.3.4	Gene3D:3.40.50.2000	GO:GO:0003674	GO:GO:0003824	GO:GO:0004645
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975
GO:GO:0005980	GO:GO:0006091	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0008184
GO:GO:0009056	GO:GO:0009266	GO:GO:0009414	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570
GO:GO:0009628	GO:GO:0009987	GO:GO:0016740	GO:GO:0016757	GO:GO:0030170	GO:GO:0102250
GO:GO:0102499	InterPro:Glycg_phsphrylas	InterPro:Glyco_trans_35	UniProt:K4BHG4	PFAM:PF00343	PIRSF:PIRSF000460
ScanProsite:PS00102	PANTHER:PTHR11468	PANTHER:PTHR11468:SF8	InterPro:Pyridoxal_P_attach_site	SUPFAM:SSF53756	EnsemblPlantsGene:Solyc03g065340.2
EnsemblPlants:Solyc03g065340.2.1	TIGRFAMs:TIGR02093	UniParc:UPI00027679FB	SEG:seg	:	:

Description

Alpha-1,4 glucan phosphorylase [Source:UniProtKB/TrEMBL;Acc:K4BHG4]

Coordinates

chr3:+:41422916..41431714

Molecular Weight (calculated)

109384.0 Da

IEP (calculated)

5.353

GRAVY (calculated)

-0.390

Length

966 amino acids

Sequence
(BLAST)

001: MATANGAHLF NHCGSNSRFI HFTSRNTTSK LFLTKTSHFR TPKRSFHVNN ILTDKIHHPI TEQGGESDLS CFSPDAASIT SSIKYHAEFT PVFSPERFEL
101: PNAFFATAQS VRDSLLINWN ATYDVYEKLN MKQAYYLSME FLQGRALLNA IGNLELTGAF AEALKNLGHN LENVASQEPD AALGNGGLGR LASCFLDSLA
201: TLNYPAWGYG LRYKYGLFQQ RITKDGQEEV AEDWLEIGSP WEVVRNDVSY PIKFYGKVST GSDGKRYWIG GEDIKAVAYD VPIPGYKTRT TISLRLWSTQ
301: VPSADFNLSA FNAGEHTKAC EAQANAEKIC YILYPGDESE EGKILRLKQQ YTLCSASLQD IISRFERRSG DRIKWEEFPE KVAVQMNDTH PTLCIPELMR
401: ILIDLKGLNW NEAWNITQRT VAYTNHTVLP EALEKWSYEL MQKLLPRHVE IIEAIDEELV HEIVSKYGSL DLNKLEDKLT TMRILENFDL PSSVAEFFIN
501: PEISVDDDTE TLEVHDKVEA SDKVVTNDED DTGKKTSMKT EASAEKDIDK KTPVSPEPAV IPLKKVRMAN LCVVGGHAVN GVAEIHSEIV KEEVFNGFYE
601: LWPEKFQNKT NGVTPRRWIR FCNPPLSAII TKWTGTEEWV LKTEKLAELQ KFADNEDLQN EWREAKRSNK IKVVSFLKEK TGYSVVPDAM FDIQVKRIHE
701: YKRQLLNILG IVYRYKKMKE MKAAERKTNF VPRVCIFGGK AFATYVQAKR IVKFITDVGA TINHDPEIGD LLKVVFVPDY NVSVAELLIP ASDLSEHIST
801: AGMEASGTSN MKFAMNGCIQ IGTLDGANVE IREEVGEENF FLFGAQAHEI AGLRKERADG KFVPDERFEE VKEFVRSGAF GSYNYDDLIG SLEGNEGFGR
901: ADYFLVGKDF PSYIECQEKV DEAYRDQKRW TKMSILNTAG SYKFSSDRTI HEYAKDIWNI EAVEIA

Best Arabidopsis Sequence Match ( AT3G29320.1 )
(BLAST)

001: MDTMRISGVS TGAEVLIQCN SLSSLVSRRC DDGKWRTRMF PARNRDLRPS PTRRSFLSVK SISSEPKAKV TDAVLDSEQE VFISSMNPFA PDAASVASSI
101: KYHAEFTPLF SPEKFELPKA FFATAQSVRD ALIMNWNATY EYYNRVNVKQ AYYLSMEFLQ GRALSNAVGN LGLNSAYGDA LKRLGFDLES VASQEPDPAL
201: GNGGLGRLAS CFLDSMATLN YPAWGYGLRY KYGLFKQRIT KDGQEEAAED WLELSNPWEI VRNDVSYPIK FYGKVVFGSD GKKRWIGGED IVAVAYDVPI
301: PGYKTKTTIN LRLWSTKAPS EDFDLSSYNS GKHTEAAEAL FNAEKICFVL YPGDESTEGK ALRLKQQYTL CSASLQDIVA RFETRSGGNV NWEEFPEKVA
401: VQMNDTHPTL CIPELMRILM DLKGLSWEDA WKITQRTVAY TNHTVLPEAL EKWSLELMEK LLPRHVEIIE KIDEELVRTI VSEYGTADPD LLEEKLKAMR
501: ILENVELPSA FADVIVKPVN KPVTAKDAQN GVKTEQEEEK TAGEEEEDEV IPEPTVEPPK MVRMANLAVV GGHAVNGVAE IHSEIVKQDV FNDFVQLWPE
601: KFQNKTNGVT PRRWIRFCNP YLSDIITNWI GTEDWVLNTE KVAELRKFAD NEDLQSEWRA AKKKNKLKVV SLIKERTGYT VSPDAMFDIQ IKRIHEYKRQ
701: LLNILGIVYR YKKMKEMSAS EREKAFVPRV CIFGGKAFAT YVQAKRIVKF ITDVASTINH DPEIGDLLKV IFVPDYNVSV AELLIPASEL SQHISTAGME
801: ASGTSNMKFS MNGCVLIGTL DGANVEIREE VGEENFFLFG AKADQIVNLR KERAEGKFVP DPTFEEVKKF VGSGVFGSNS YDELIGSLEG NEGFGRADYF
901: LVGKDFPSYI ECQEKVDEAY RDQKRWTRMS IMNTAGSFKF SSDRTIHEYA KDIWNIKQVE LP

Arabidopsis Description

PHS1Alpha-glucan phosphorylase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIB2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.