Factsheet for VIT_14s0108g01560.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400008970	Potato	extracellular, plastid	17.62	85.22
CDY04076	Canola	plastid	72.2	76.4
CDY44394	Canola	plastid	72.3	76.1
Bra033098.1-P	Field mustard	plastid	72.2	75.99
PGSC0003DMT400006337	Potato	cytosol	14.97	75.77
KRH18405	Soybean	endoplasmic reticulum, plastid	75.36	75.66
Solyc03g065340.2.1	Tomato	plastid	74.34	75.57
KRG93626	Soybean	plastid	75.46	75.54
Bra025392.1-P	Field mustard	plastid	72.61	74.27
CDX86372	Canola	plastid	72.61	74.27
VIT_01s0011g00730.t01	Wine grape	plastid	74.13	74.21
CDX85266	Canola	plastid	72.4	74.14
AT3G29320.1	Thale cress	plastid	72.61	74.12
PGSC0003DMT400020094	Potato	cytosol	31.06	73.67
VIT_06s0004g06020.t01	Wine grape	cytosol	52.75	61.45
CDY38599	Canola	cytosol	18.84	60.06
CDY38600	Canola	extracellular	6.82	58.77
VIT_10s0003g00250.t01	Wine grape	plastid	41.75	41.0

Protein Annotations

KEGG:00500+2.4.1.1	EntrezGene:100245621	wikigene:100245621	MapMan:3.2.3.3.4	Gene3D:3.40.50.2000	ProteinID:CBI22291
ProteinID:CBI22291.3	ncoils:Coil	UniProt:D7SXJ4	EMBL:FN595239	GO:GO:0003674	GO:GO:0003824
GO:GO:0004645	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005975	GO:GO:0005980	GO:GO:0006091	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0008184	GO:GO:0009056	GO:GO:0009266	GO:GO:0009414	GO:GO:0009507	GO:GO:0009536
GO:GO:0009570	GO:GO:0009628	GO:GO:0009987	GO:GO:0016740	GO:GO:0016757	GO:GO:0030170
GO:GO:0102250	GO:GO:0102499	InterPro:Glycg_phsphrylas	InterPro:Glyco_trans_35	EntrezGene:LOC100245621	wikigene:LOC100245621
PFAM:PF00343	PIRSF:PIRSF000460	ScanProsite:PS00102	PANTHER:PTHR11468	PANTHER:PTHR11468:SF8	InterPro:Pyridoxal_P_attach_site
SUPFAM:SSF53756	TIGR:TC54533	TIGRFAMs:TIGR02093	UniParc:UPI0001BE1D15	ArrayExpress:VIT_14s0108g01560	EnsemblPlantsGene:VIT_14s0108g01560
EnsemblPlants:VIT_14s0108g01560.t01	RefSeq:XP_002279075	RefSeq:XP_002279075.2	SEG:seg	:	:

Description

Alpha-1,4 glucan phosphorylase [Source:UniProtKB/TrEMBL;Acc:D7SXJ4]

Coordinates

chr14:+:30082257..30107286

Molecular Weight (calculated)

111391.0 Da

IEP (calculated)

4.947

GRAVY (calculated)

-0.347

Length

982 amino acids

Sequence
(BLAST)

001: MASSSFSTAS TAPHAYSHCY SISRSFVGGF SSRPSHSKLF FLRNTSASRF ATRAFPVRSV FSEPHRKLKD EDPITPHGPS GTPVSLTADA ACIVSSIKYH
101: AEFTPLFSPE QFELPKAFFA TAQSVRDALI INWNATYDYH EKMNVKQAYY LSMEFLQGRA LLNAIGNLEL TGAYAEALRE LGKDLENVAR QEPDAALGNG
201: GLGRLASCFL DSLATLNYPA WGYGLRYKYG LFKQHITKDG QEEVAEDWLE MGNPWEIVRN DVSYPVKFYG KVIEGSDGKR HWIGGEDIIA IAYDVPIPGY
301: KTKTTINLRL WSTKVQSDDF DLYDFNAGNH TKACEAQLNA EKICYILYPG DDSMEGKVLR LKQQYTLCSA SLQDIIARFE RRSGGYVNWE EFPEKVAVQM
401: NDTHPTLCIP ELMRILMDLK GMSWKEAWKI TQRTVAYTNH TVLPEALEKW SLELMQKLLP RHVEIIEMID EELINTIISE YGTADPVLLE KKLKAMRILE
501: NVDFPASVKD LLVQPEESSV VEPGEEIQSF DEEVELIDEE EELIELIDEE EEFIDEEEEP TGKGTQKKKV LSEPVPEPPK MVRMANLCVV GGHAVNGVAE
601: IHSEIVKDEV FNDFFKLWPE KFQNKTNGVT PRRWIRFCNP DLSEIITKWI HTEDWVLNTE KLSELRKFAD DEELHAEWRA AKRSNKMKVV SFLKEKTGYL
701: VSPDAMFDVQ VKRIHEYKRQ LLNILGIVYR YKKMKEMTAA ERKAKFVPRV CIFGGKAFAT YVQAKRIVKF ITDVGTTVNH DSEIGDLLKV VFVPDYNVSV
801: AELLIPASEL SQHISTAGME ASGTSNMKFA MNGCILIGTL DGANVEIRQE VGEDNFFLFG AQAHEIAGLR KERAEGKFVP DPRFEEVKEF VRSGIFGPCN
901: YDELIGSLEG NEGFGQADYF LVGKDFPSYI ECQEKVDEAY GDQKRWTRMS ILNAAGSYKF SSDRTIHEYA KDIWNIEPVE LP

Best Arabidopsis Sequence Match ( AT3G29320.1 )
(BLAST)

001: MDTMRISGVS TGAEVLIQCN SLSSLVSRRC DDGKWRTRMF PARNRDLRPS PTRRSFLSVK SISSEPKAKV TDAVLDSEQE VFISSMNPFA PDAASVASSI
101: KYHAEFTPLF SPEKFELPKA FFATAQSVRD ALIMNWNATY EYYNRVNVKQ AYYLSMEFLQ GRALSNAVGN LGLNSAYGDA LKRLGFDLES VASQEPDPAL
201: GNGGLGRLAS CFLDSMATLN YPAWGYGLRY KYGLFKQRIT KDGQEEAAED WLELSNPWEI VRNDVSYPIK FYGKVVFGSD GKKRWIGGED IVAVAYDVPI
301: PGYKTKTTIN LRLWSTKAPS EDFDLSSYNS GKHTEAAEAL FNAEKICFVL YPGDESTEGK ALRLKQQYTL CSASLQDIVA RFETRSGGNV NWEEFPEKVA
401: VQMNDTHPTL CIPELMRILM DLKGLSWEDA WKITQRTVAY TNHTVLPEAL EKWSLELMEK LLPRHVEIIE KIDEELVRTI VSEYGTADPD LLEEKLKAMR
501: ILENVELPSA FADVIVKPVN KPVTAKDAQN GVKTEQEEEK TAGEEEEDEV IPEPTVEPPK MVRMANLAVV GGHAVNGVAE IHSEIVKQDV FNDFVQLWPE
601: KFQNKTNGVT PRRWIRFCNP YLSDIITNWI GTEDWVLNTE KVAELRKFAD NEDLQSEWRA AKKKNKLKVV SLIKERTGYT VSPDAMFDIQ IKRIHEYKRQ
701: LLNILGIVYR YKKMKEMSAS EREKAFVPRV CIFGGKAFAT YVQAKRIVKF ITDVASTINH DPEIGDLLKV IFVPDYNVSV AELLIPASEL SQHISTAGME
801: ASGTSNMKFS MNGCVLIGTL DGANVEIREE VGEENFFLFG AKADQIVNLR KERAEGKFVP DPTFEEVKKF VGSGVFGSNS YDELIGSLEG NEGFGRADYF
901: LVGKDFPSYI ECQEKVDEAY RDQKRWTRMS IMNTAGSFKF SSDRTIHEYA KDIWNIKQVE LP

Arabidopsis Description

PHS1Alpha-glucan phosphorylase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIB2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.