CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG93626	Soybean	plastid	94.68	94.39
PGSC0003DMT400008970	Potato	extracellular, plastid	17.38	83.74
KRG89536	Soybean	cytosol, endoplasmic reticulum, vacuole	6.85	81.71
CDY44394	Canola	plastid	73.01	76.53
Bra033098.1-P	Field mustard	plastid	72.9	76.42
CDY04076	Canola	plastid	72.39	76.29
CDX85266	Canola	plastid	74.44	75.91
Bra025392.1-P	Field mustard	plastid	74.03	75.42
CDX86372	Canola	plastid	74.03	75.42
VIT_14s0108g01560.t01	Wine grape	plastid	75.66	75.36
AT3G29320.1	Thale cress	plastid	73.62	74.84
Solyc03g065340.2.1	Tomato	plastid	73.42	74.33
PGSC0003DMT400006337	Potato	cytosol	14.72	74.23
PGSC0003DMT400020094	Potato	cytosol	30.98	73.19
KRG89496	Soybean	plastid	69.63	69.63
KRH46442	Soybean	nucleus	53.27	61.58
KRG98345	Soybean	cytosol, nucleus	52.97	61.23
CDY38599	Canola	cytosol	18.0	57.14
CDY38600	Canola	extracellular	6.65	57.02
KRH21364	Soybean	plastid	42.23	41.22

Protein Annotations

KEGG:00500+2.4.1.1	EntrezGene:100800659	MapMan:3.2.3.3.4	Gene3D:3.40.50.2000	EMBL:ACUP02008071	EnsemblPlantsGene:GLYMA_13G057800
GO:GO:0003674	GO:GO:0003824	GO:GO:0004645	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0005980	GO:GO:0006091	GO:GO:0008150
GO:GO:0008152	GO:GO:0008184	GO:GO:0009056	GO:GO:0009987	GO:GO:0016740	GO:GO:0016757
GO:GO:0030170	GO:GO:0102250	GO:GO:0102499	InterPro:Glycg_phsphrylas	InterPro:Glyco_trans_35	UniProt:I1LWR4
EnsemblPlants:KRH18405	ProteinID:KRH18405	ProteinID:KRH18405.1	PFAM:PF00343	PIRSF:PIRSF000460	ScanProsite:PS00102
PANTHER:PTHR11468	PANTHER:PTHR11468:SF8	MetaCyc:PWY-5941	MetaCyc:PWY-6731	MetaCyc:PWY-6737	MetaCyc:PWY-7238
InterPro:Pyridoxal_P_attach_site	SUPFAM:SSF53756	TIGRFAMs:TIGR02093	UniParc:UPI000233AE1F	SEG:seg	:

Description

hypothetical protein

Coordinates

chr13:-:15537334..15547315

Molecular Weight (calculated)

110045.0 Da

IEP (calculated)

5.446

GRAVY (calculated)

-0.348

Length

978 amino acids

Sequence
(BLAST)

001: MASSATMRFS ATSTGAEAAL PRRNSVAGFI GVAARSSAKS RLRFIGRNAN LSLRRRMSSF PVVKCVSGSE AKAQDPVAKQ QEATTSLSSF SPDASSIASS
101: IKYHAEFTPL FSPENFDLPQ AFLATAQSVR DALIINWNAT YDYYEKLNVK QAYYLSMEFL QGRALLNAIG NLELTGPHAE ALSKLGHKLE NVAYQEPDAA
201: LGNGGLGRLA SCFLDSLATL NYPAWGYGLR YKYGLFKQRI TKDGQEEVAD DWLEMGNPWE IIRNDVSYPV KFYGKVVSGS DGKKHWIGGE DIKAVAHDVP
301: IPGYKTKTTI NLRLWSTKAA SEEFDLSAFN AGRHTEASEA LANAEKICYI LYPGDESIEG KILRLKQQYT LCSASLQDII ARFERRSGTN VNWEEFPEKV
401: AVQMNDTHPT LCIPELMRIL IDVKGLSWKD AWNITQRTVA YTNHTVLPEA LEKWSLDLMQ KLLPRHIEII EMIDEELIRT IIAEYGTENS DLLEKKLKEM
501: RILENVELPA EFADIVVKSK EAIDIPSEEL QSSEQAEVEE RKDDEVEAVA KKNGTDESSI EDEKEELPEP VPEPPKLVRM ANLCVVGGHA VNGVAEIHSE
601: IVKDEVFNAF YKLWPEKFQN KTNGVTPRRW IRFCNPDLSK IITEWIGTED WVLNTGKLAE LRKFVDNEDL QVQWREAKRS NKVKVAAFIR EKTGYSVSPD
701: AMFDIQVKRI HEYKRQLLNI FGIVYRYKKM KEMSAAERKA NFVPRVCIFG GKAFATYVQA KRIVKFITDV GATVNHDPEI GDLLKVVFVP DYNVSVAEML
801: IPASELSQHI STAGMEASGT SNMKFAMNGC ILIGTLDGAN VEIREEVGAD NFFLFGAKAH EIAGLRKERA EGKFVPDPRF EEVKEFVRSG VFGSYNYDEL
901: MGSLEGNEGF GRADYFLVGK DFPSYIECQE KVDEAYRNQT KWTRMSILNT AGSYKFSSDR TIHEYAREIW NIEPVQLP

Best Arabidopsis Sequence Match ( AT3G29320.1 )
(BLAST)

001: MDTMRISGVS TGAEVLIQCN SLSSLVSRRC DDGKWRTRMF PARNRDLRPS PTRRSFLSVK SISSEPKAKV TDAVLDSEQE VFISSMNPFA PDAASVASSI
101: KYHAEFTPLF SPEKFELPKA FFATAQSVRD ALIMNWNATY EYYNRVNVKQ AYYLSMEFLQ GRALSNAVGN LGLNSAYGDA LKRLGFDLES VASQEPDPAL
201: GNGGLGRLAS CFLDSMATLN YPAWGYGLRY KYGLFKQRIT KDGQEEAAED WLELSNPWEI VRNDVSYPIK FYGKVVFGSD GKKRWIGGED IVAVAYDVPI
301: PGYKTKTTIN LRLWSTKAPS EDFDLSSYNS GKHTEAAEAL FNAEKICFVL YPGDESTEGK ALRLKQQYTL CSASLQDIVA RFETRSGGNV NWEEFPEKVA
401: VQMNDTHPTL CIPELMRILM DLKGLSWEDA WKITQRTVAY TNHTVLPEAL EKWSLELMEK LLPRHVEIIE KIDEELVRTI VSEYGTADPD LLEEKLKAMR
501: ILENVELPSA FADVIVKPVN KPVTAKDAQN GVKTEQEEEK TAGEEEEDEV IPEPTVEPPK MVRMANLAVV GGHAVNGVAE IHSEIVKQDV FNDFVQLWPE
601: KFQNKTNGVT PRRWIRFCNP YLSDIITNWI GTEDWVLNTE KVAELRKFAD NEDLQSEWRA AKKKNKLKVV SLIKERTGYT VSPDAMFDIQ IKRIHEYKRQ
701: LLNILGIVYR YKKMKEMSAS EREKAFVPRV CIFGGKAFAT YVQAKRIVKF ITDVASTINH DPEIGDLLKV IFVPDYNVSV AELLIPASEL SQHISTAGME
801: ASGTSNMKFS MNGCVLIGTL DGANVEIREE VGEENFFLFG AKADQIVNLR KERAEGKFVP DPTFEEVKKF VGSGVFGSNS YDELIGSLEG NEGFGRADYF
901: LVGKDFPSYI ECQEKVDEAY RDQKRWTRMS IMNTAGSFKF SSDRTIHEYA KDIWNIKQVE LP

Arabidopsis Description

PHS1Alpha-glucan phosphorylase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIB2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.