CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 3
plastid 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG98345	Soybean	cytosol, nucleus	97.28	97.28
VIT_06s0004g06020.t01	Wine grape	cytosol	84.04	84.34
Solyc09g031970.2.1	Tomato	cytosol, nucleus, plastid	81.44	82.32
CDX86109	Canola	cytosol	81.68	82.16
GSMUA_Achr6P33840_001	Banana	cytosol	81.32	82.1
Bra018180.1-P	Field mustard	cytosol	81.44	81.93
CDX99080	Canola	cytosol	81.32	81.81
AT3G46970.1	Thale cress	cytosol	80.61	81.09
HORVU3Hr1G085390.1	Barley	cytosol	11.94	79.53
TraesCS3B01G398000.1	Wheat	cytosol, golgi	77.78	79.09
TraesCS3D01G359300.1	Wheat	cytosol	77.66	78.97
TraesCS3D01G359200.1	Wheat	cytosol	77.66	78.97
TraesCS3A01G366300.1	Wheat	cytosol	77.42	78.73
TraesCS3A01G366400.1	Wheat	cytosol, plastid	77.42	78.73
TraesCS3B01G397900.1	Wheat	cytosol	77.42	78.73
Os01t0851700-01	Rice	cytosol, nucleus, plasma membrane, plastid	78.13	78.6
EES03893	Sorghum	cytosol	77.19	77.92
HORVU2Hr1G012630.6	Barley	mitochondrion, plastid	46.45	77.51
HORVU3Hr1G085420.12	Barley	cytosol	49.88	76.31
HORVU3Hr1G085380.5	Barley	cytosol, plastid	43.74	74.0
Zm00001d042842_P003	Maize	cytosol	77.66	69.97
HORVU3Hr1G085410.1	Barley	plastid	15.96	66.5
HORVU6Hr1G085990.1	Barley	cytosol	4.02	64.15
KRH18405	Soybean	endoplasmic reticulum, plastid	61.58	53.27
KRG93626	Soybean	plastid	61.47	53.01
KRG89496	Soybean	plastid	59.93	51.84
KRG89536	Soybean	cytosol, endoplasmic reticulum, vacuole	4.96	51.22
KRH21364	Soybean	plastid	46.93	39.62

Protein Annotations

KEGG:00500+2.4.1.1	EntrezGene:100789789	MapMan:3.2.3.5.2	Gene3D:3.40.50.2000	EMBL:ACUP02005344	EnsemblPlantsGene:GLYMA_08G334000
GO:GO:0003674	GO:GO:0003824	GO:GO:0004645	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0005980	GO:GO:0006091	GO:GO:0008150
GO:GO:0008152	GO:GO:0008184	GO:GO:0009056	GO:GO:0009987	GO:GO:0016740	GO:GO:0016757
GO:GO:0030170	GO:GO:0102250	GO:GO:0102499	InterPro:Glycg_phsphrylas	InterPro:Glyco_trans_35	UniProt:I1KYU6
EnsemblPlants:KRH46442	ProteinID:KRH46442	ProteinID:KRH46442.1	PFAM:PF00343	PIRSF:PIRSF000460	ScanProsite:PS00102
PANTHER:PTHR11468	PANTHER:PTHR11468:SF4	MetaCyc:PWY-5941	MetaCyc:PWY-6731	MetaCyc:PWY-6737	MetaCyc:PWY-7238
InterPro:Pyridoxal_P_attach_site	SUPFAM:SSF53756	TIGRFAMs:TIGR02093	UniParc:UPI000233910A	SEG:seg	:

Description

hypothetical protein

Coordinates

chr8:+:45141369..45149582

Molecular Weight (calculated)

95832.2 Da

IEP (calculated)

6.387

GRAVY (calculated)

-0.348

Length

846 amino acids

Sequence
(BLAST)

001: MAAKVDANGG GGKGGVSAVS AKVPAVAHPL AEKPDEVASN ISYHAQFSPH FSPFKFELEQ AYYATAESVR DRLIRQWNET YLHFHKVDPK QTYYLSMEFL
101: QGRALTNAIG NLNIQDAYAN ALRKFGLELE EIAEQEKDAA LGNGGLGRLA SCFLDSMATL NLPSWGYGLR YRYGLFKQRI TREGQEEVAE DWLEKFSPWE
201: VVRHDILYPI RFFGHVEVNP DGSRKWVGGE VVQALAYDVP IPGYQTKNTI SLRLWEAKAS AEDFNLFLFN DGQHDAASVL HSRAQQICAV LYPGDTTEGG
301: KLLRLKQQFF LCSASLQDII SRFKERRQGP WNWSEFPTKV AVQLNDTHPT LAIPELMRLL MDDEGLGWDE AWDVTSKTIA YTNHTVLPEA LEKWSQPVMW
401: KLLPRHMEII QEIDKRFTAM INTTRLDLEN ELSAMRILDD NPQKPVVRMA NLCVVSSHAV NGVAQLHSDI LKSELFANYV SIWPTKFQNK TNGITPRRWL
501: QFCNPELGGI ITKWLKTDKW VTNLDLLTGL RQFADNEDLQ AEWLSAKMAS KQRLARYVLQ VTGESIDPDT LFDIQVKRIH EYKRQLLNIL GVIYRYKKLK
601: EMSLEERKNT TPRTVMIGGK AFATYTNAIR IVRLVNDVGA VVNSDPEVNG YLKVVFVPNY NVSVAEVLIP GSELSQHIST AGMEASGTSN MKFALNGCLI
701: IGTLDGANVE IREEIGEDNF FLFGATAEDV PRLRKERENG LFKPDPRFEE AKKFIRSGVF GSYDYNPLLE SLEGNSGYGR GDYFLVGHDF PSYMDTQAKV
801: DEAYRDRKRW LKMSILSTAG SGKFSSDRTI AQYAKEIWNI EECRVP

Best Arabidopsis Sequence Match ( AT3G46970.1 )
(BLAST)

001: MANANGKAAT SLPEKISAKA NPEADDATEI AGNIVYHAKY SPHFSPLKFG PEQALYATAE SLRDRLIQLW NETYVHFNKV DPKQTYYLSM EYLQGRALTN
101: AIGNLNLQGP YADALRTLGY ELEEIAEQEK DAALGNGGLG RLASCFLDSM ATLNLPAWGY GLRYRHGLFK QIITKKGQEE IPEDWLEKFS PWEIVRHDVV
201: FPVRFFGKVQ VNPDGSRKWV DGDVVQALAY DVPIPGYGTK NTISLRLWEA KARAEDLDLF QFNEGEYELA AQLHSRAQQI CTVLYPGDAT ENGKLLRLKQ
301: QFFLCSASLQ DIISRFHERS TTEGSRKWSE FPSKVAVQMN DTHPTLAIPE LMRLLMDDNG LGWDEAWDVT SKTVAYTNHT VLPEALEKWS QSLMWKLLPR
401: HMEIIEEIDK RFVQTIRDTR VDLEDKISSL SILDNNPQKP VVRMANLCVV SSHTVNGVAQ LHSDILKAEL FADYVSIWPN KFQNKTNGIT PRRWLRFCSP
501: ELSDIITKWL KTDKWITDLD LLTGLRQFAD NEELQSEWAS AKTANKKRLA QYIERVTGVS IDPTSLFDIQ VKRIHEYKRQ LMNILGVVYR FKKLKEMKPE
601: ERKKTVPRTV MIGGKAFATY TNAKRIVKLV NDVGDVVNSD PEVNEYLKVV FVPNYNVTVA EMLIPGSELS QHISTAGMEA SGTSNMKFAL NGCLIIGTLD
701: GANVEIREEV GEENFFLFGA TADQVPRLRK EREDGLFKPD PRFEEAKQFV KSGVFGSYDY GPLLDSLEGN TGFGRGDYFL VGYDFPSYMD AQAKVDEAYK
801: DRKGWLKMSI LSTAGSGKFS SDRTIAQYAK EIWNIEACPV P

Arabidopsis Description

PHS2Alpha-glucan phosphorylase 2, cytosolic [Source:UniProtKB/Swiss-Prot;Acc:Q9SD76]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.