Factsheet for Solyc09g031970.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

cytosol 4
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0004g06020.t01	Wine grape	cytosol	83.75	83.16
KRH46442	Soybean	nucleus	82.32	81.44
HORVU3Hr1G085390.1	Barley	cytosol	12.31	81.1
CDX86109	Canola	cytosol	80.88	80.5
KRG98345	Soybean	cytosol, nucleus	81.36	80.5
Bra018180.1-P	Field mustard	cytosol	80.76	80.38
CDX99080	Canola	cytosol	80.65	80.26
GSMUA_Achr6P33840_001	Banana	cytosol	79.81	79.71
AT3G46970.1	Thale cress	cytosol	79.21	78.83
Os01t0851700-01	Rice	cytosol, nucleus, plasma membrane, plastid	78.14	77.76
TraesCS3D01G359300.1	Wheat	cytosol	77.06	77.52
TraesCS3D01G359200.1	Wheat	cytosol	77.06	77.52
TraesCS3B01G398000.1	Wheat	cytosol, golgi	77.06	77.52
TraesCS3B01G397900.1	Wheat	cytosol	76.82	77.28
TraesCS3A01G366400.1	Wheat	cytosol, plastid	76.7	77.16
TraesCS3A01G366300.1	Wheat	cytosol	76.58	77.04
EES03893	Sorghum	cytosol	76.58	76.49
HORVU2Hr1G012630.6	Barley	mitochondrion, plastid	45.64	75.35
HORVU3Hr1G085420.12	Barley	cytosol	49.7	75.23
HORVU3Hr1G085380.5	Barley	cytosol, plastid	43.13	72.2
Zm00001d042842_P003	Maize	cytosol	77.42	69.01
HORVU6Hr1G085990.1	Barley	cytosol	3.94	62.26
HORVU3Hr1G085410.1	Barley	plastid	14.93	61.58
Solyc05g012510.2.1	Tomato	plastid	62.96	54.5
Solyc03g065340.2.1	Tomato	plastid	62.01	53.73
Solyc02g077680.2.1	Tomato	plastid	47.43	39.42

Protein Annotations

KEGG:00500+2.4.1.1	MapMan:3.2.3.5.2	Gene3D:3.40.50.2000	GO:GO:0003674	GO:GO:0003824	GO:GO:0004645
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975
GO:GO:0005980	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0008184	GO:GO:0009056
GO:GO:0009987	GO:GO:0016740	GO:GO:0016757	GO:GO:0030170	GO:GO:0102250	GO:GO:0102499
InterPro:Glycg_phsphrylas	InterPro:Glyco_trans_35	UniProt:K4CSQ2	PFAM:PF00343	PIRSF:PIRSF000460	ScanProsite:PS00102
PANTHER:PTHR11468	PANTHER:PTHR11468:SF4	InterPro:Pyridoxal_P_attach_site	SUPFAM:SSF53756	EnsemblPlantsGene:Solyc09g031970.2	EnsemblPlants:Solyc09g031970.2.1
TIGRFAMs:TIGR02093	UniParc:UPI000276C909	SEG:seg	:	:	:

Description

Alpha-glucan phosphorylase 2, cytosolic [Source:Projected from Arabidopsis thaliana (AT3G46970) UniProtKB/Swiss-Prot;Acc:Q9SD76]

Coordinates

chr9:-:26652632..26667791

Molecular Weight (calculated)

94926.0 Da

IEP (calculated)

6.654

GRAVY (calculated)

-0.367

Length

837 amino acids

Sequence
(BLAST)

001: MEGEGEGAKS NDVSAAVISE PLTDIASNIK YHAQYTPHFS PFNFEPLQAY YAATADSVRD RLIKQWNDTY LHYHKLNPKQ TYYLSMEYLQ GRALTNAIGN
101: LDIHNAYAHA LNKLGQDLEE VVDQEKDAAL GNGGLGRLAS CFLDSMATLN LPAWGYGLRY RYGLFKQLIT KAGQEEVPED WLEKFSPWEI VRHDVVFPIR
201: FFGHVEVLPS GSRKWVGGEV VQALAYDVPI PGYKTKNTNS LRLWEAKASS EDFNLFLFND GQYDAAAQLH SRAQQICAVL YPGDATENGK LLRLKQQFFL
301: CSASLQDIIA RFKEREDGKG AHQWSEFPKK VAIQLNDTHP TLTIPELMRL LMDDEGLGWG ESWNITTKTI AYTNHTVLPE ALEKWSQAVM WKLLPRHMEI
401: IEEIDKRFVA TIMSERPDLE NKMHSMRILD HNATKPVVHM ANLCVVSSHT VNGVAQLHSD ILKAELFADY VSVWPTKFQN KTNGITPRRW IRFCSPELSH
501: IITKWLKTDQ WVTNLELLAN LREFADNSEL HAEWESAKMA NKQRLAHYIL RVTGLSISPN TLFDIQVKRI HEYKRQLLNI LGVIYRYKKL KGMSPEERKN
601: TTPRTIMIGG KAFATYTNAK RIVKLVTDVG DVVNSDPDVN DYLKVVFVPN YNVSVAEMLI PGSELSQHIS TAGMEASGTS NMKFALNGCL IIGTLDGANV
701: EIREEIGEDN FFLFGATADE VPQLRKDREN GLFKPDPRFG EAKQFIRSGA FGTYDYNPLL ESLEGNSGYG RGDYFLVGHD FSSYMDAQAR VDEAYKDRKR
801: WIKMSILSTC GSGKFSSDRT ISQYAKEIWN IAECRVP

Best Arabidopsis Sequence Match ( AT3G46970.1 )
(BLAST)

001: MANANGKAAT SLPEKISAKA NPEADDATEI AGNIVYHAKY SPHFSPLKFG PEQALYATAE SLRDRLIQLW NETYVHFNKV DPKQTYYLSM EYLQGRALTN
101: AIGNLNLQGP YADALRTLGY ELEEIAEQEK DAALGNGGLG RLASCFLDSM ATLNLPAWGY GLRYRHGLFK QIITKKGQEE IPEDWLEKFS PWEIVRHDVV
201: FPVRFFGKVQ VNPDGSRKWV DGDVVQALAY DVPIPGYGTK NTISLRLWEA KARAEDLDLF QFNEGEYELA AQLHSRAQQI CTVLYPGDAT ENGKLLRLKQ
301: QFFLCSASLQ DIISRFHERS TTEGSRKWSE FPSKVAVQMN DTHPTLAIPE LMRLLMDDNG LGWDEAWDVT SKTVAYTNHT VLPEALEKWS QSLMWKLLPR
401: HMEIIEEIDK RFVQTIRDTR VDLEDKISSL SILDNNPQKP VVRMANLCVV SSHTVNGVAQ LHSDILKAEL FADYVSIWPN KFQNKTNGIT PRRWLRFCSP
501: ELSDIITKWL KTDKWITDLD LLTGLRQFAD NEELQSEWAS AKTANKKRLA QYIERVTGVS IDPTSLFDIQ VKRIHEYKRQ LMNILGVVYR FKKLKEMKPE
601: ERKKTVPRTV MIGGKAFATY TNAKRIVKLV NDVGDVVNSD PEVNEYLKVV FVPNYNVTVA EMLIPGSELS QHISTAGMEA SGTSNMKFAL NGCLIIGTLD
701: GANVEIREEV GEENFFLFGA TADQVPRLRK EREDGLFKPD PRFEEAKQFV KSGVFGSYDY GPLLDSLEGN TGFGRGDYFL VGYDFPSYMD AQAKVDEAYK
801: DRKGWLKMSI LSTAGSGKFS SDRTIAQYAK EIWNIEACPV P

Arabidopsis Description

PHS2Alpha-glucan phosphorylase 2, cytosolic [Source:UniProtKB/Swiss-Prot;Acc:Q9SD76]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.