Factsheet for Solyc05g012510.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400072963	Potato	cytosol, extracellular, plastid	93.48	92.72
VIT_01s0011g00730.t01	Wine grape	plastid	76.73	75.64
Os03t0758100-01	Rice	cytosol, plasma membrane, plastid	67.84	73.38
GSMUA_Achr4P32600_001	Banana	plastid	70.22	73.25
HORVU5Hr1G096390.5	Barley	cytosol, plastid	68.77	72.36
KRG89496	Soybean	plastid	71.46	70.65
Solyc03g065340.2.1	Tomato	plastid	69.39	69.46
TraesCS5A01G395200.1	Wheat	plastid	69.08	69.01
TraesCS5D01G404500.1	Wheat	golgi, plastid	69.08	69.01
TraesCS5B01G400000.1	Wheat	golgi, plastid	68.98	68.69
KXG37513	Sorghum	plastid	69.7	68.43
Zm00001d034074_P003	Maize	plastid	68.15	66.77
Solyc09g031970.2.1	Tomato	cytosol, nucleus, plastid	54.5	62.96
Solyc02g077680.2.1	Tomato	plastid	43.23	41.51

Protein Annotations

KEGG:00500+2.4.1.1	MapMan:3.2.3.3.4	Gene3D:3.40.50.2000	ncoils:Coil	GO:GO:0003674	GO:GO:0003824
GO:GO:0004645	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005975	GO:GO:0005980	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0008184
GO:GO:0009056	GO:GO:0009987	GO:GO:0016740	GO:GO:0016757	GO:GO:0030170	GO:GO:0102250
GO:GO:0102499	InterPro:Glycg_phsphrylas	InterPro:Glyco_trans_35	UniProt:K4BXX3	PFAM:PF00343	PIRSF:PIRSF000460
ScanProsite:PS00102	PANTHER:PTHR11468	PANTHER:PTHR11468:SF14	InterPro:Pyridoxal_P_attach_site	SUPFAM:SSF53756	EnsemblPlantsGene:Solyc05g012510.2
EnsemblPlants:Solyc05g012510.2.1	TIGRFAMs:TIGR02093	UniParc:UPI00027658AE	SEG:seg	:	:

Description

Alpha-1,4 glucan phosphorylase [Source:UniProtKB/TrEMBL;Acc:K4BXX3]

Coordinates

chr5:-:5760758..5767157

Molecular Weight (calculated)

109880.0 Da

IEP (calculated)

5.061

GRAVY (calculated)

-0.401

Length

967 amino acids

Sequence
(BLAST)

001: MATFAVSGLN SISSFNNNFR SKNSNIFLSR KRSLLFNLRR RRRSFYVSNV ASDQKQKTKD SSSDEGFTLD VYQPDSTSVL SSIKYHAEFT PSFSPEKFEL
101: PKAYYATAES VRDMLILSWN ATYEYYEKMN VKQAYYLSME FLQGRALLNA IGNLGLNGPY ADALTKLGYS LEDVARQEPD AALGNGGLGR LASCFLDSMA
201: TLNYPAWGYG LRYQYGLFKQ LITKDGQEEV AENWLEMGNP WEIVRNDISY PVKFYGKVIE GADGSKEWVG GEDITAVAYD VPIPGYKTKT TINLRLWSTK
301: LAAEAFDLHA FNNGDHAKAY EAQKKAEKIC YVLYPGDESL EGKTLRLKQQ YTLCSASLQD IIARFEKRSG NAVNWDQFPE KVAVQMNDTH PTLCIPELLR
401: ILIDVKGLSW KQAWGITQRT VAYTNHTVLP EALEKWSFTL LGELLPRHVE IIAMIDEELL LTILTEYGTE DLDLLQEKLN QMRILDNVEI PTSVLELLIK
501: AEENAADVEK AAEEEQLEEG KDEETEAVKA ETTNVEEETE VEKVEVKDSQ AKIKRIFGPH ANRPQVVHMA NLCVVSGHAV NGVAEIHSEI VKDEVFNEFY
601: KLWPEKFQNK TNGVTPRRWL SFCNPELSEI ITKWTGSDDW LVNTEKLAEL RKFADNEELQ SEWRKAKGNN KMKIVSLIKE KTGYVVSPDA MFDVQIKRIH
701: EYKRQLLNIF GIVYRYKKMK EMSPEERKEK FVPRVCIFGG KAFATYVQAK RIVKFITDVG ATVNHDPEIG DLLKVVFVPD YNVSVAEVLI PGSELSQHIS
801: TAGMEASGTS NMKFSMNGCL LIGTLDGANV EIREEVGEDN FFLFGAQAHE IAGLRKERAE GKFIPDPRFE EVKAFIRTGV FGPYNYEELM GSLEGNEGFG
901: RADYFLVGKD FPDYIECQDK VDEAYRDQKK WTKMSILNTA GSFKFSSDRT IHQYARDIWR IEPVELP

Best Arabidopsis Sequence Match ( AT3G29320.1 )
(BLAST)

001: MDTMRISGVS TGAEVLIQCN SLSSLVSRRC DDGKWRTRMF PARNRDLRPS PTRRSFLSVK SISSEPKAKV TDAVLDSEQE VFISSMNPFA PDAASVASSI
101: KYHAEFTPLF SPEKFELPKA FFATAQSVRD ALIMNWNATY EYYNRVNVKQ AYYLSMEFLQ GRALSNAVGN LGLNSAYGDA LKRLGFDLES VASQEPDPAL
201: GNGGLGRLAS CFLDSMATLN YPAWGYGLRY KYGLFKQRIT KDGQEEAAED WLELSNPWEI VRNDVSYPIK FYGKVVFGSD GKKRWIGGED IVAVAYDVPI
301: PGYKTKTTIN LRLWSTKAPS EDFDLSSYNS GKHTEAAEAL FNAEKICFVL YPGDESTEGK ALRLKQQYTL CSASLQDIVA RFETRSGGNV NWEEFPEKVA
401: VQMNDTHPTL CIPELMRILM DLKGLSWEDA WKITQRTVAY TNHTVLPEAL EKWSLELMEK LLPRHVEIIE KIDEELVRTI VSEYGTADPD LLEEKLKAMR
501: ILENVELPSA FADVIVKPVN KPVTAKDAQN GVKTEQEEEK TAGEEEEDEV IPEPTVEPPK MVRMANLAVV GGHAVNGVAE IHSEIVKQDV FNDFVQLWPE
601: KFQNKTNGVT PRRWIRFCNP YLSDIITNWI GTEDWVLNTE KVAELRKFAD NEDLQSEWRA AKKKNKLKVV SLIKERTGYT VSPDAMFDIQ IKRIHEYKRQ
701: LLNILGIVYR YKKMKEMSAS EREKAFVPRV CIFGGKAFAT YVQAKRIVKF ITDVASTINH DPEIGDLLKV IFVPDYNVSV AELLIPASEL SQHISTAGME
801: ASGTSNMKFS MNGCVLIGTL DGANVEIREE VGEENFFLFG AKADQIVNLR KERAEGKFVP DPTFEEVKKF VGSGVFGSNS YDELIGSLEG NEGFGRADYF
901: LVGKDFPSYI ECQEKVDEAY RDQKRWTRMS IMNTAGSFKF SSDRTIHEYA KDIWNIKQVE LP

Arabidopsis Description

PHS1Alpha-glucan phosphorylase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIB2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.