Factsheet for PGSC0003DMT400072963

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular, cytosol

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

cytosol: 22313117
extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g012510.2.1	Tomato	plastid	92.72	93.48
PGSC0003DMT400008970	Potato	extracellular, plastid	15.9	76.35
VIT_01s0011g00730.t01	Wine grape	plastid	76.31	75.84
Os03t0758100-01	Rice	cytosol, plasma membrane, plastid	67.69	73.83
GSMUA_Achr4P32600_001	Banana	plastid	69.44	73.03
HORVU5Hr1G096390.5	Barley	cytosol, plastid	68.72	72.91
KRG89496	Soybean	plastid	70.36	70.14
PGSC0003DMT400006337	Potato	cytosol	13.95	70.1
TraesCS5D01G404500.1	Wheat	golgi, plastid	69.03	69.52
TraesCS5A01G395200.1	Wheat	plastid	68.92	69.42
TraesCS5B01G400000.1	Wheat	golgi, plastid	68.92	69.21
KXG37513	Sorghum	plastid	69.64	68.93
PGSC0003DMT400020094	Potato	cytosol	29.23	68.84
Zm00001d034074_P003	Maize	plastid	68.21	67.38
PGSC0003DMT400081273	Potato	cytosol, plastid	42.67	41.39

Protein Annotations

KEGG:00500+2.4.1.1	MapMan:3.2.3.3.4	Gene3D:3.40.50.2000	ProteinID:CAA52036	ProteinID:CAA52036.1	ncoils:Coil
GO:GO:0003674	GO:GO:0003824	GO:GO:0004645	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152
GO:GO:0008184	GO:GO:0009501	GO:GO:0009507	GO:GO:0009536	GO:GO:0016740	GO:GO:0016757
GO:GO:0030170	GO:GO:0102250	GO:GO:0102499	InterPro:Glycg_phsphrylas	InterPro:Glyco_trans_35	UniProt:M1CRA7
PFAM:PF00343	EnsemblPlantsGene:PGSC0003DMG400028382	PGSC:PGSC0003DMG400028382	EnsemblPlants:PGSC0003DMT400072963	PIRSF:PIRSF000460	ScanProsite:PS00102
PANTHER:PTHR11468	PANTHER:PTHR11468:SF14	InterPro:Pyridoxal_P_attach_site	SUPFAM:SSF53756	TIGRFAMs:TIGR02093	UniParc:UPI000295872E
EMBL:X73684	SEG:seg	:	:	:	:

Description

Alpha-1,4 glucan phosphorylase L-2 isozyme, chloroplastic/amyloplastic [Source:PGSC_GENE;Acc:PGSC0003DMG400028382]

Coordinates

chr5:+:346678..352885

Molecular Weight (calculated)

110896.0 Da

IEP (calculated)

5.039

GRAVY (calculated)

-0.427

Length

975 amino acids

Sequence
(BLAST)

001: MATFAVSGLN SISSISSFNN NFRSKNSNIL LSRRRILLFS FRRRRRRSFS VSSVASDQKQ KTKDSSSDEG FTLDVFQPDS TSVLSSIKYH AEFMPSFSPE
101: KFELPKAYYA TAESVRDTLI INWNATYEFY EKMNVKQAYY LSMEFLQGRA LLNAIGNLGL TGPYADALTK LGYSLEDVAR QEPDAALGNG GLGRLASCFL
201: DSMATLNYPA WGYGLRYQYG LFKQLITKDG QEEVAENWLE MGNPWEIVRN DISYPVKFYG KVIEGADGRK EWAGGEDITA VAYDVPIPGY KTKTTINLRL
301: WTTKLAAEAF DLHAFNNGDH AKAYEAQKKA EKICYVLYPG DESLEGKTLR LKQQYTLCSA SLQDIIARFE KRSGNAVNWD QFPEKVAVQM NDTHPTLCIP
401: ELLRILMDVK GLSWKQAWEI TQRTVAYTNH TVLPEALEKW SFTLLGELLP RHVEIIAMID EELLHTILAE YGTEDLDLLQ EKLNQMRILD NVEIPTSVLE
501: LLIKAEENAA DVEKAADEEQ EEEGKDDSKD EETEAVKAET TNEEEETEVK KVEVEDSQAK IKRIFGPHPN KSQVVHMANL CVVSGHAVNG VAEIHSEIVK
601: DEVFNEFYKL WPEKFQNKTN GVTPRRWLSF CNPELSEIIT KWTGSDDWLV NTEKLAELRK FADNEELQSE WRKAKGNNKM KIVSLIKEKT GYVVSPDAMF
701: DVQIKRIHEY KRQLLNIFGI VYRYKKMKEM SPEERKEKFV PRVCIFGGKA FATYVQAKRI VKFITDVGAT VNHDPEIGDL LKVVFVPDYN VSVAEVLIPG
801: SELSQHISTA GMEASGTSNM KFSMNGCLLI GTLDGANVEI REEVGEDNFF LFGAQAHEIA GLRKERAEGR FVPDPRFEEV KVFIRTGVFG TYNYEELMGS
901: LEGNEGYGRA DYFLVGKDFP DYIECQDKVD EAYRDQKKWT KMSILNTAGS FKFSSDRTIH QYARDIWRIE PVELP

Best Arabidopsis Sequence Match ( AT3G29320.1 )
(BLAST)

001: MDTMRISGVS TGAEVLIQCN SLSSLVSRRC DDGKWRTRMF PARNRDLRPS PTRRSFLSVK SISSEPKAKV TDAVLDSEQE VFISSMNPFA PDAASVASSI
101: KYHAEFTPLF SPEKFELPKA FFATAQSVRD ALIMNWNATY EYYNRVNVKQ AYYLSMEFLQ GRALSNAVGN LGLNSAYGDA LKRLGFDLES VASQEPDPAL
201: GNGGLGRLAS CFLDSMATLN YPAWGYGLRY KYGLFKQRIT KDGQEEAAED WLELSNPWEI VRNDVSYPIK FYGKVVFGSD GKKRWIGGED IVAVAYDVPI
301: PGYKTKTTIN LRLWSTKAPS EDFDLSSYNS GKHTEAAEAL FNAEKICFVL YPGDESTEGK ALRLKQQYTL CSASLQDIVA RFETRSGGNV NWEEFPEKVA
401: VQMNDTHPTL CIPELMRILM DLKGLSWEDA WKITQRTVAY TNHTVLPEAL EKWSLELMEK LLPRHVEIIE KIDEELVRTI VSEYGTADPD LLEEKLKAMR
501: ILENVELPSA FADVIVKPVN KPVTAKDAQN GVKTEQEEEK TAGEEEEDEV IPEPTVEPPK MVRMANLAVV GGHAVNGVAE IHSEIVKQDV FNDFVQLWPE
601: KFQNKTNGVT PRRWIRFCNP YLSDIITNWI GTEDWVLNTE KVAELRKFAD NEDLQSEWRA AKKKNKLKVV SLIKERTGYT VSPDAMFDIQ IKRIHEYKRQ
701: LLNILGIVYR YKKMKEMSAS EREKAFVPRV CIFGGKAFAT YVQAKRIVKF ITDVASTINH DPEIGDLLKV IFVPDYNVSV AELLIPASEL SQHISTAGME
801: ASGTSNMKFS MNGCVLIGTL DGANVEIREE VGEENFFLFG AKADQIVNLR KERAEGKFVP DPTFEEVKKF VGSGVFGSNS YDELIGSLEG NEGFGRADYF
901: LVGKDFPSYI ECQEKVDEAY RDQKRWTRMS IMNTAGSFKF SSDRTIHEYA KDIWNIKQVE LP

Arabidopsis Description

PHS1Alpha-glucan phosphorylase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIB2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.