CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY08148
CDY19576
CDY24801
CDY27538
CDY35449
CDY37312
CDY50073

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G21175.1	CDY19576	AT3G21175.1	21798944
AT3G21175.1	CDY27538	AT3G21175.1	21798944
AT3G21175.1	CDY37312	AT3G21175.1	21798944
AT3G21175.1	CDY50073	AT3G21175.1	21798944
AT3G21175.1	CDY08148	AT3G49580.1	21798944
AT3G21175.1	CDY24801	AT4G23770.1	21798944
AT3G21175.1	CDY35449	AT4G23770.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra031258.1-P	Field mustard	nucleus	92.64	86.29
CDY50073	Canola	nucleus	70.9	73.61
CDY46552	Canola	nucleus	52.84	60.54
AT3G21175.1	Thale cress	nucleus	59.87	60.27
CDY52949	Canola	nucleus	51.84	52.36
GSMUA_Achr2P04520_001	Banana	nucleus	28.09	51.85
CDY27538	Canola	nucleus	60.87	47.15
CDY37312	Canola	cytosol, nucleus, plastid	57.19	46.59
VIT_09s0054g00440.t01	Wine grape	nucleus	45.48	45.48
GSMUA_Achr3P05620_001	Banana	nucleus	37.46	44.8
KRH44616	Soybean	extracellular, vacuole	48.49	43.41
CDY57283	Canola	nucleus	15.05	42.06
GSMUA_Achr9P13870_001	Banana	nucleus	41.47	40.92
CDX92633	Canola	nucleus	34.45	39.77
CDY11013	Canola	nucleus	32.78	37.55
GSMUA_Achr10P...	Banana	nucleus	40.13	36.92
Os02t0148500-01	Rice	nucleus	39.46	35.98
CDY56573	Canola	nucleus	35.79	34.85
CDY61010	Canola	nucleus	36.12	34.84
EER88899	Sorghum	nucleus	40.13	34.09
TraesCS7B01G323600.1	Wheat	nucleus	43.14	33.08
Zm00001d014656_P003	Maize	nucleus	39.13	32.68
TraesCS7D01G416000.2	Wheat	nucleus	42.14	32.31
TraesCS6A01G118800.2	Wheat	nucleus	36.45	31.96
Zm00001d036494_P001	Maize	nucleus	38.13	31.84
TraesCS6D01G108700.2	Wheat	nucleus	36.12	31.58
TraesCS6B01G146800.2	Wheat	nucleus	35.45	30.99
TraesCS7A01G423100.2	Wheat	nucleus	41.14	30.98
HORVU6Hr1G021570.1	Barley	nucleus	34.45	30.56
HORVU7Hr1G097840.6	Barley	nucleus	41.47	26.5

Protein Annotations

MapMan:15.5.1.3	Gene3D:3.30.50.10	GO:A0A078G2Q4	UniProt:A0A078G2Q4	InterPro:CCT_domain	EnsemblPlants:CDY19576
ProteinID:CDY19576	ProteinID:CDY19576.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00009234001	InterPro:IPR000679	InterPro:IPR010399
InterPro:IPR010402	InterPro:IPR013088	PFAM:PF00320	PFAM:PF06200	PFAM:PF06203	ScanProsite:PS00344
PFscan:PS50114	PFscan:PS51017	PFscan:PS51320	PANTHER:PTHR10071	PANTHER:PTHR10071:SF282	SMART:SM00401
SMART:SM00979	SUPFAM:SSF57716	InterPro:Tify_dom	UniParc:UPI0004EECD18	InterPro:Znf_GATA	InterPro:Znf_NHR/GATA
SEG:seg	:	:	:	:	:

Description

BnaA05g19840DBnaA05g19840D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G2Q4]

Coordinates

chrLK032098:-:146747..149057

Molecular Weight (calculated)

33013.6 Da

IEP (calculated)

6.790

GRAVY (calculated)

-0.937

Length

299 amino acids

Sequence
(BLAST)

001: MDDDGSLHGN NGGMHNGGDE LPMHVQYEHH GMMDEHADDG MNGGLETDIP SHLANSSDHR GEVVDRGGEN GDQLTLSYQG QVYVFDHVLP EKVQAVLLLL
101: GGREVPQTLP TTVGSPHQNN RGLSGTPQRF SAPQRQASLL RFREKRKGRN FDKTIRYTVR KEVALRMQRK KGQFTSAKSS NEESALTGPD WGSGQSWALE
201: GCETQKPEAL CRHCGTSENS TPMMRRGPEG PRTLCNACGL MWANKGALRD LSKGPPPQIT RNLPANKNDE SNLEADQMMV VAGDNSNSNW EKHCRQEKM

Best Arabidopsis Sequence Match ( AT3G21175.2 )
(BLAST)

001: MDDLHGRNGR MHIGVAQNPM HVQYEDHGLH HIDNENSMMD DHADGGMDEG VETDIPSHPG NSADNRGEVV DRGIENGDQL TLSFQGQVYV FDRVSPEKVQ
101: AVLLLLGGRE VPHTLPTTLG SPHQNNRGLS GTPQRLSVPQ RLASLLRFRE KRKGRNFDKT IRYTVRKEVA LRMQRKKGQF TSAKSSNDDS GSTGSDWGSN
201: QSWAVEGTET QKPEVLCRHC GTSEKSTPMM RRGPDGPRTL CNACGLMWAN KGTLRDLSKV PPPQTPQHLS LNKNEDANLE ADQMMEVTGD ISNTQ

Arabidopsis Description

GATA24GATA transcription factor 24 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXL7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.