Factsheet for Zm00001d036494_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d007536_P001
Zm00001d009013_P001
Zm00001d014656_P003
Zm00001d027518_P001
Zm00001d027974_P002
Zm00001d036494_P001
Zm00001d038002_P001
Zm00001d039271_P001
Zm00001d046662_P001
Zm00001d049167_P001
Zm00001d050298_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G51600.1	Zm00001d007536_P001	AT1G01260.1	21798944
AT1G51600.1	Zm00001d009013_P001	AT1G01260.1	21798944
AT1G51600.1	Zm00001d039271_P001	AT1G01260.1	21798944
AT1G51600.1	Zm00001d027974_P002	AT2G02560.1	21798944
AT1G51600.1	Zm00001d046662_P001	AT2G02560.1	21798944
AT1G51600.1	Zm00001d049167_P001	AT2G02560.1	21798944
AT1G51600.1	Zm00001d050298_P001	AT2G02560.1	21798944
AT1G51600.1	Zm00001d027518_P001	AT2G47450.1	21798944
AT1G51600.1	Zm00001d014656_P003	AT3G21175.1	21798944
AT1G51600.1	Zm00001d036494_P001	AT3G21175.1	21798944
AT1G51600.1	Zm00001d038002_P001	AT5G58575.1	21798944
AT3G21175.1	Zm00001d014656_P003	AT3G21175.1	21798944
AT3G21175.1	Zm00001d036494_P001	AT3G21175.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d014656_P003	Maize	nucleus	64.25	64.25
GSMUA_Achr2P04520_001	Banana	nucleus	27.65	61.11
GSMUA_Achr3P05620_001	Banana	nucleus	38.55	55.2
GSMUA_Achr9P13870_001	Banana	nucleus	39.39	46.53
TraesCS7D01G416000.2	Wheat	nucleus	50.56	46.41
TraesCS7A01G423100.2	Wheat	nucleus	50.84	45.84
TraesCS7B01G323600.1	Wheat	nucleus	49.44	45.38
CDY46552	Canola	nucleus	31.84	43.68
Bra014292.1-P	Field mustard	nucleus	31.56	43.46
VIT_09s0054g00440.t01	Wine grape	nucleus	34.36	41.14
AT1G51600.1	Thale cress	nucleus	34.64	41.06
AT3G21175.1	Thale cress	nucleus	33.8	40.74
GSMUA_Achr10P...	Banana	nucleus	36.59	40.31
CDY50073	Canola	nucleus	31.84	39.58
HORVU7Hr1G097840.6	Barley	nucleus	50.56	38.68
CDY19576	Canola	nucleus	31.84	38.13
CDY52949	Canola	nucleus	30.73	37.16
KRH44616	Soybean	extracellular, vacuole	34.36	36.83
Bra031258.1-P	Field mustard	nucleus	32.4	36.14
Zm00001d013331_P001	Maize	nucleus	26.82	34.53
Zm00001d033523_P001	Maize	nucleus	27.65	34.38
CDY37312	Canola	cytosol, nucleus, plastid	34.08	33.24
Bra023900.1-P	Field mustard	nucleus	32.12	31.68
CDY27538	Canola	nucleus	33.8	31.35

Protein Annotations

EntrezGene:100282175	MapMan:15.5.1.3	Gene3D:3.30.50.10	ProteinID:AQK81169.1	InterPro:CCT_domain	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	GO:GO:0046872
InterPro:IPR000679	InterPro:IPR010399	InterPro:IPR010402	InterPro:IPR013088	UniProt:K7UY56	EMBL:KJ728047
EMBL:KU512874	PFAM:PF00320	PFAM:PF06200	PFAM:PF06203	ScanProsite:PS00344	PFscan:PS50114
PFscan:PS51017	PFscan:PS51320	PANTHER:PTHR10071	PANTHER:PTHR10071:SF296	SMART:SM00401	SMART:SM00979
SUPFAM:SSF57716	InterPro:Tify_dom	UniParc:UPI000221B89E	EnsemblPlantsGene:Zm00001d036494	EnsemblPlants:Zm00001d036494_P001	EnsemblPlants:Zm00001d036494_T001
InterPro:Znf_GATA	InterPro:Znf_NHR/GATA	SEG:seg	:	:	:

Description

ZIM-transcription factor 20GATA transcription factor 24

Coordinates

chr6:+:90506221..90511243

Molecular Weight (calculated)

38128.6 Da

IEP (calculated)

4.891

GRAVY (calculated)

-0.568

Length

358 amino acids

Sequence
(BLAST)

001: MSHSHHDGSK PYQPRRGPER PPQPADGIAV PPPAAVAPSV EHLVAAAAEA EALSRLGAEQ QQLLQGHEQE VGEEEGEDEE EDEMEDDDDD DDEQEGQHGG
101: IGVEHVPMDA DAAAAAAVAA AGAQMDPHSV LVPGTVPPMA TNQLTLSFQG EVYVFDSVSP DKVQAVLLLL GGRELSSLSG ASSSAPYSKR LNFPHRVASL
201: MRFREKRKER NFDKKIRYNV RKEVALRMQR NRGQFTSSKP KPDEIAASEM AAADGSLNWA LVEGRPPSAA ECHHCGINAT ATPMMRRGPD GPRTLCNACG
301: LMWANKGLLR DLSKSPVPLH SIQQSAPILN GGQNGSAMSA LGSELENAAA AMGNGHEP

Best Arabidopsis Sequence Match ( AT4G24470.2 )
(BLAST)

001: MFGRHSIIPN NQIGTASASA GEDHVSASAT SGHIPYDDME EIPHPDSIYG AASDLIPDGS QLVAHRSDGS ELLVSRPPEG ANQLTISFRG QVYVFDAVGA
101: DKVDAVLSLL GGSTELAPGP QVMELAQQQN HMPVVEYQSR CSLPQRAQSL DRFRKKRNAR CFEKKVRYGV RQEVALRMAR NKGQFTSSKM TDGAYNSGTD
201: QDSAQDDAHP EISCTHCGIS SKCTPMMRRG PSGPRTLCNA CGLFWANRGT LRDLSKKTEE NQLALMKPDD GGSVADAANN LNTEAASVEE HTSMVSLANG
301: DNSNLLGDH

Arabidopsis Description

ZIMGATA-type zinc finger protein with TIFY domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4JQX4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.