Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra010544.1-P | |
| Bra017974.1-P | |
| Bra023900.1-P | |
| Bra031258.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G21175.1 | Bra023900.1-P | AT3G21175.1 | 21798944 |
| AT3G21175.1 | Bra031258.1-P | AT3G21175.1 | 21798944 |
| AT3G21175.1 | Bra017974.1-P | AT3G49580.1 | 21798944 |
| AT3G21175.1 | Bra010544.1-P | AT4G23770.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY27538 | Canola | nucleus | 84.57 | 79.53 |
| CDY37312 | Canola | cytosol, nucleus, plastid | 79.61 | 78.75 |
| AT3G21175.1 | Thale cress | nucleus | 46.28 | 56.57 |
| Bra031258.1-P | Field mustard | nucleus | 47.66 | 53.89 |
| Bra014292.1-P | Field mustard | nucleus | 37.74 | 52.69 |
| GSMUA_Achr2P04520_001 | Banana | nucleus | 22.59 | 50.62 |
| VIT_09s0054g00440.t01 | Wine grape | nucleus | 37.74 | 45.82 |
| GSMUA_Achr3P05620_001 | Banana | nucleus | 31.13 | 45.2 |
| GSMUA_Achr9P13870_001 | Banana | nucleus | 35.54 | 42.57 |
| KRH44616 | Soybean | extracellular, vacuole | 38.84 | 42.22 |
| Bra019227.1-P | Field mustard | nucleus | 28.37 | 39.46 |
| GSMUA_Achr10P... | Banana | nucleus | 34.44 | 38.46 |
| Bra013805.1-P | Field mustard | nucleus | 28.1 | 37.92 |
| Os02t0148500-01 | Rice | nucleus | 31.41 | 34.76 |
| EER88899 | Sorghum | nucleus | 32.23 | 33.24 |
| Zm00001d014656_P003 | Maize | nucleus | 32.51 | 32.96 |
| Zm00001d036494_P001 | Maize | nucleus | 31.68 | 32.12 |
| TraesCS6D01G108700.2 | Wheat | nucleus | 30.03 | 31.87 |
| TraesCS7B01G323600.1 | Wheat | nucleus | 34.16 | 31.79 |
| TraesCS6B01G146800.2 | Wheat | nucleus | 29.75 | 31.58 |
| TraesCS7D01G416000.2 | Wheat | nucleus | 33.88 | 31.54 |
| TraesCS7A01G423100.2 | Wheat | nucleus | 34.44 | 31.49 |
| TraesCS6A01G118800.2 | Wheat | nucleus | 28.93 | 30.79 |
| HORVU6Hr1G021570.1 | Barley | nucleus | 28.1 | 30.27 |
| HORVU7Hr1G097840.6 | Barley | nucleus | 33.06 | 25.64 |
Protein Annotations
| MapMan:15.5.1.3 | Gene3D:3.30.50.10 | EnsemblPlantsGene:Bra023900 | EnsemblPlants:Bra023900.1 | EnsemblPlants:Bra023900.1-P | InterPro:CCT_domain |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| GO:GO:0046872 | InterPro:IPR000679 | InterPro:IPR010399 | InterPro:IPR010402 | InterPro:IPR013088 | UniProt:M4E546 |
| PFAM:PF00320 | PFAM:PF06200 | PFAM:PF06203 | ScanProsite:PS00344 | PFscan:PS50114 | PFscan:PS51017 |
| PFscan:PS51320 | PANTHER:PTHR10071 | PANTHER:PTHR10071:SF282 | SMART:SM00401 | SMART:SM00979 | SUPFAM:SSF57716 |
| InterPro:Tify_dom | UniParc:UPI0002544710 | InterPro:Znf_GATA | InterPro:Znf_NHR/GATA | SEG:seg | : |
Description
AT3G21175 (E=7e-117) ZML1 | ZML1 (ZIM-LIKE 1); sequence-specific DNA binding / transcription factor/ zinc ion binding
Coordinates
chrA01:-:20909869..20913488
Molecular Weight (calculated)
40666.2 Da
IEP (calculated)
8.725
GRAVY (calculated)
-0.668
Length
363 amino acids
Sequence
(BLAST)
(BLAST)
001: MRSFLRFNLD TSFLSIVVFG EFIVDDKRGD EVKKFWLRNI FVLLCSRFTK LQEEIVRPRS GDAAPFVVKP TLKMSETMDD DLHGNNGGMH NGGGVQDPNH
101: SMHVQYDHHG MMDEQHADDV MNEGLEADIP SHLGNTSDHR GEVVDRGSEN GDQLTLSFQG QVYVFDRVLP EKVQAVLLLL GGREVPNTVP TNVGSPHQNN
201: RGLSGTPQRF SARHRQASLL RFREKRKGRN FDKTIRYTVR KEVALRMQRK KGQFTSAKSS NEDSASNGSD WGSGQSWALE GTEAQKPEAL CRHCGTSEKS
301: TPMMRRGPEG PRTLCNACGL MWANKGALRD LSKAPPPPTA QNLPANKIDV SEKHQFFLLY YIA
101: SMHVQYDHHG MMDEQHADDV MNEGLEADIP SHLGNTSDHR GEVVDRGSEN GDQLTLSFQG QVYVFDRVLP EKVQAVLLLL GGREVPNTVP TNVGSPHQNN
201: RGLSGTPQRF SARHRQASLL RFREKRKGRN FDKTIRYTVR KEVALRMQRK KGQFTSAKSS NEDSASNGSD WGSGQSWALE GTEAQKPEAL CRHCGTSEKS
301: TPMMRRGPEG PRTLCNACGL MWANKGALRD LSKAPPPPTA QNLPANKIDV SEKHQFFLLY YIA
001: MDDLHGRNGR MHIGVAQNPM HVQYEDHGLH HIDNENSMMD DHADGGMDEG VETDIPSHPG NSADNRGEVV DRGIENGDQL TLSFQGQVYV FDRVSPEKVQ
101: AVLLLLGGRE VPHTLPTTLG SPHQNNRGLS GTPQRLSVPQ RLASLLRFRE KRKGRNFDKT IRYTVRKEVA LRMQRKKGQF TSAKSSNDDS GSTGSDWGSN
201: QSWAVEGTET QKPEVLCRHC GTSEKSTPMM RRGPDGPRTL CNACGLMWAN KGTLRDLSKV PPPQTPQHLS LNKNEDANLE ADQMMEVTGD ISNTQ
101: AVLLLLGGRE VPHTLPTTLG SPHQNNRGLS GTPQRLSVPQ RLASLLRFRE KRKGRNFDKT IRYTVRKEVA LRMQRKKGQF TSAKSSNDDS GSTGSDWGSN
201: QSWAVEGTET QKPEVLCRHC GTSEKSTPMM RRGPDGPRTL CNACGLMWAN KGTLRDLSKV PPPQTPQHLS LNKNEDANLE ADQMMEVTGD ISNTQ
Arabidopsis Description
GATA24GATA transcription factor 24 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXL7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.