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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • cytosol 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra003986.1-P
Bra004407.1-P
Bra004879.1-P
Bra007875.1-P
Bra010544.1-P
Bra028632.1-P
Bra030903.1-P
Bra037965.1-P
Bra040332.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G23770.1 Bra030903.1-P AT1G54120.1 21798944
AT4G23770.1 Bra037965.1-P AT1G54120.1 21798944
AT4G23770.1 Bra003986.1-P AT1G69690.1 21798944
AT4G23770.1 Bra004407.1-P AT1G69690.1 21798944
AT4G23770.1 Bra007875.1-P AT1G69690.1 21798944
AT4G23770.1 Bra004879.1-P AT2G44950.1 21798944
AT4G23770.1 Bra040332.1-P AT2G44950.1 21798944
AT4G23770.1 Bra010544.1-P AT4G23770.1 21798944
AT4G23770.1 Bra028632.1-P AT5G09450.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY24801 Canola nucleus 92.91 92.91
CDY35449 Canola nucleus 89.76 87.02
AT4G23770.1 Thale cress cytosol 37.01 34.06
AT4G23780.1 Thale cress nucleus 36.22 26.74
Protein Annotations
EnsemblPlants:Bra010544.1EnsemblPlants:Bra010544.1-PEnsemblPlantsGene:Bra010544SEG:segUniParc:UPI0002545FF9UniProt:M4D244
MapMan:35.2:::::
Description
No Description!
Coordinates
chrA08:-:15075990..15076476
Molecular Weight (calculated)
14086.3 Da
IEP (calculated)
4.304
GRAVY (calculated)
-0.671
Length
127 amino acids
Sequence
(BLAST)
001: MSGGENVSFA EHEVLKGKHE TLLREHGTSI STIELLEKKL KEALLVEQKG DYWEKKYLEL HKKLETVVNN IKDLMYSEVA GENPGTAALG EDRKVVIVLS
101: DDDEGDGSES SGGDSDSENQ ENLSFYL
Best Arabidopsis Sequence Match ( AT4G23770.1 )
(BLAST)
001: MSSRLDQLVN KYNKSCENVS FAEHMILKDK YESLVIEHES LIKTLELLEK THGFTVEDLV TKQKEALEKK EVIEKWENKF GEMEKKLKTV ERSIEYIMSV
101: DVQTGVDSDM STSEDDDGNR RQRKGRLINS SDHDHFIL
Arabidopsis Description
Uncharacterized protein At4g23770 [Source:UniProtKB/TrEMBL;Acc:Q84JI2]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.