Factsheet for Bra028632.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6
nucleus 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra004879.1-P
Bra011328.1-P
Bra014069.1-P
Bra032216.1-P
Bra040332.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G09450.1	Bra014069.1-P	AT1G47260.1	21798944
AT5G09450.1	Bra032216.1-P	AT1G47260.1	21798944
AT5G09450.1	Bra004879.1-P	AT2G44950.1	21798944
AT5G09450.1	Bra040332.1-P	AT2G44950.1	21798944
AT5G09450.1	Bra011328.1-P	AT4G32190.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY44801	Canola	mitochondrion	94.31	94.31
AT5G09450.1	Thale cress	mitochondrion	83.17	82.15
KRH43872	Soybean	mitochondrion	56.93	58.23
KRH10583	Soybean	mitochondrion	57.18	57.89
Solyc10g047370.1.1	Tomato	mitochondrion	54.7	55.39
PGSC0003DMT400011461	Potato	mitochondrion	54.46	55.0
VIT_11s0078g00180.t01	Wine grape	cytosol	25.0	52.88
Os04t0450200-01	Rice	cytosol	35.15	48.63
EES10908	Sorghum	mitochondrion	48.02	46.75
Zm00001d003500_P001	Maize	mitochondrion	48.51	46.34
GSMUA_Achr10P...	Banana	cytosol	49.26	45.12
TraesCS2A01G318100.1	Wheat	mitochondrion	46.78	45.11
TraesCS2B01G336200.1	Wheat	mitochondrion	46.78	45.11
TraesCS2D01G315700.1	Wheat	mitochondrion	47.28	43.31
HORVU2Hr1G079080.2	Barley	cytosol	28.96	42.55
HORVU3Hr1G070650.1	Barley	cytosol	14.6	40.69
HORVU1Hr1G085940.2	Barley	cytosol	15.1	35.88
Bra011054.1-P	Field mustard	mitochondrion	21.53	25.51
Bra018528.1-P	Field mustard	mitochondrion	31.44	24.71
Bra027131.1-P	Field mustard	mitochondrion	26.49	21.79
Bra031484.1-P	Field mustard	mitochondrion	26.49	21.75
Bra038762.1-P	Field mustard	mitochondrion	25.99	21.52
Bra036629.1-P	Field mustard	mitochondrion	24.75	20.96
Bra036673.1-P	Field mustard	mitochondrion	24.5	20.71
Bra020588.1-P	Field mustard	mitochondrion	24.26	19.96
Bra033215.1-P	Field mustard	mitochondrion	25.25	19.92
Bra032862.1-P	Field mustard	mitochondrion	18.56	19.79
Bra033321.1-P	Field mustard	mitochondrion	25.0	19.61
Bra032863.1-P	Field mustard	mitochondrion	19.31	19.5
Bra000902.1-P	Field mustard	mitochondrion	22.77	18.36
Bra036496.1-P	Field mustard	plastid	20.05	16.7
Bra031586.1-P	Field mustard	mitochondrion	19.55	14.88
Bra027226.1-P	Field mustard	plastid	20.05	13.46
Bra001400.1-P	Field mustard	mitochondrion, plastid	24.5	13.22
Bra032865.1-P	Field mustard	cytosol	17.82	12.54
Bra003559.1-P	Field mustard	cytosol	20.79	11.8
Bra026128.1-P	Field mustard	cytosol	22.28	9.67
Bra032866.1-P	Field mustard	mitochondrion	12.87	8.15

Protein Annotations

EnsemblPlants:Bra028632.1	EnsemblPlants:Bra028632.1-P	EnsemblPlantsGene:Bra028632	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015
PANTHER:PTHR24015:SF504	PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	SEG:seg	TIGRFAMs:TIGR00756
UniParc:UPI0002543330	UniProt:M4EIL7	MapMan:35.1	:	:	:

Description

AT5G09450 (E=6e-175) | pentatricopeptide (PPR) repeat-containing protein

Coordinates

chrA02:+:2762500..2764079

Molecular Weight (calculated)

46031.5 Da

IEP (calculated)

5.447

GRAVY (calculated)

-0.408

Length

404 amino acids

Sequence
(BLAST)

001: MATRSIFRTI SGRLTVGSNL TRNAESSRFS KPYSADAAIG GSIVEDSEEK DDLRSRIFRL RLPKRSATTV LEKWVGEGNQ ITVNELRVIS KELRRTRRYK
101: HALEVTEYLV QHEETNISDA DYASRIDLIS KVFGIDAAER YFEGLQPSSK TPETYTSLLH AYAASKQTER AEALFKRIIE SDSLTFGAIT YNEMMTLYMS
201: IGEVEKVRDV IEVMKGRNVS PDIFTYNLWL SSCAARFDID ELRRILEEMR REGGSNEGWA RYIDLTSVYI NSSRLTNAES SSPVESEKSI SQREWVTYDF
301: LMILHTGLGN KGMVDQIWKS LRNTNQKLSS RSYICVVSSY LMLGCLREAG EVVDQWKESK TTEFDGSACL RILNAFRDVG LEEKASEFQL LLVEKKCSLE
401: DEIS

Best Arabidopsis Sequence Match ( AT5G09450.1 )
(BLAST)

001: MATRSLFHSL RCRLTNNGVL GSNFIRNAES SRFSKSYNAD AAIGNSLVEE SEEKDDLKSR IFRLRLPKRS ATTVLEKWIG EGNQMTINEL REISKELRRT
101: RRYKHALEVT EWMVQHEESK ISDADYASRI DLISKVFGID AAERYFEGLD IDSKTAETYT SLLHAYAASK QTERAEALFK RIIESDSLTF GAITYNEMMT
201: LYMSVGQVEK VPEVIEVLKQ KKVSPDIFTY NLWLSSCAAT FNIDELRKIL EEMRHDASSN EGWVRYIDLT SIYINSSRVT NAESTLPVEA EKSISQREWI
301: TYDFLMILHT GLGNKVMIDQ IWKSLRNTNQ ILSSRSYICV LSSYLMLGHL REAEEIIHQW KESKTTEFDA SACLRILNAF RDVGLEGIAS GFHLILVHNK
401: CSLENEGSS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g09450, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q94B59]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.