Factsheet for Bra033215.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90079	Canola	mitochondrion	99.8	99.8
AT1G02150.1	Thale cress	mitochondrion	90.23	88.17
VIT_15s0021g01300.t01	Wine grape	plastid	61.33	59.58
PGSC0003DMT400080049	Potato	cytosol, plastid	59.18	55.6
Solyc01g089870.2.1	Tomato	nucleus	59.18	55.6
KRH48889	Soybean	plastid	58.59	54.95
KRH66454	Soybean	plastid	58.2	53.69
GSMUA_AchrUn_...	Banana	cytosol	36.52	50.13
Zm00001d002789_P001	Maize	plastid	41.41	41.33
EES12592	Sorghum	plastid	41.41	41.16
Os04t0544400-00	Rice	plastid	40.62	40.7
TraesCS2A01G391600.1	Wheat	plastid	39.65	40.36
TraesCS2B01G410100.1	Wheat	plastid	39.65	39.96
TraesCS2D01G389900.1	Wheat	plastid	39.84	39.92
HORVU2Hr1G093220.7	Barley	mitochondrion	39.84	38.93
Bra011054.1-P	Field mustard	mitochondrion	19.73	29.62
Bra036673.1-P	Field mustard	mitochondrion	26.95	28.87
Bra000902.1-P	Field mustard	mitochondrion	28.12	28.74
Bra036629.1-P	Field mustard	mitochondrion	26.76	28.72
Bra033321.1-P	Field mustard	mitochondrion	28.52	28.35
Bra020588.1-P	Field mustard	mitochondrion	26.95	28.11
Bra027131.1-P	Field mustard	mitochondrion	26.95	28.11
Bra031484.1-P	Field mustard	mitochondrion	26.76	27.85
Bra038762.1-P	Field mustard	mitochondrion	26.37	27.66
Bra018528.1-P	Field mustard	mitochondrion	27.54	27.43
Bra028632.1-P	Field mustard	mitochondrion	19.92	25.25
Bra032863.1-P	Field mustard	mitochondrion	17.58	22.5
Bra032862.1-P	Field mustard	mitochondrion	16.41	22.16
Bra036496.1-P	Field mustard	plastid	19.34	20.41
Bra031586.1-P	Field mustard	mitochondrion	20.7	19.96
Bra001400.1-P	Field mustard	mitochondrion, plastid	24.61	16.82
Bra032865.1-P	Field mustard	cytosol	18.75	16.72
Bra027226.1-P	Field mustard	plastid	18.75	15.95
Bra003559.1-P	Field mustard	cytosol	19.92	14.33
Bra032866.1-P	Field mustard	mitochondrion	14.06	11.29
Bra026128.1-P	Field mustard	cytosol	19.73	10.85

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EnsemblPlantsGene:Bra033215	EnsemblPlants:Bra033215.1	EnsemblPlants:Bra033215.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0009507	GO:GO:0009536	InterPro:IPR002885
InterPro:IPR011990	UniProt:M4EWN1	PFAM:PF01535	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF27	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000254372F

Description

AT1G02150 (E=7e-262) | pentatricopeptide (PPR) repeat-containing protein

Coordinates

chrA10:+:4852219..4853823

Molecular Weight (calculated)

58574.6 Da

IEP (calculated)

8.778

GRAVY (calculated)

-0.363

Length

512 amino acids

Sequence
(BLAST)

001: MLLQAVQNRN VPLASSASYS RLPRCRSPVV SVAPLKKKTA IIVCSISQVY GYGTVDYERR PIIQWNAIYK KISLMEKPEL GAASVLNQWE KGGRKLTKWE
101: LCRVVKELRK YKRPNQALEV YDWMNKRGER FRLSASDAAI QLDLIGKVRG ISDAEEFFLS LPDNFKDRRV YGSLLNAYVR AKSREKAEAL IDIMRQKGYA
201: LHPLPFNVMM TLYMNLREYD KVDAMVFEMK QKDIRLDIYS YNIWLSSCAS VEQMEQVYQQ MKSDVSINPN WTTFSTMATM YIKMGEPEKA QDALRKVEAR
301: ITGRNRIPYH YLLSLYGSVG NKKELFRVWN VYKSVVPSIP NLGYHALVSS LVRMGDVEAA EKVYEEWLPV KSSYDPRIPN LLMNVYVKND QLDKAEGLFD
401: HMIEMGGKPS PGTWEILADG HTRKRSITEA LACLKEAFSA QGSSSWRPKV LVLSGFFKLC EEESDVTSKE TVLELLSQSG HLQDKSYQAL IDADENDAHD
501: TDVLVTQLQD DL

Best Arabidopsis Sequence Match ( AT1G02150.1 )
(BLAST)

001: MLLQAAVQNR NVPLASSASY SRLLRCRSPV VSVAALSKKT AAIVCSISQV YGYGTVDYER RPIVQWNAIY KKISLMEKPE LGAASVLNQW EKAGRKLTKW
101: ELCRVVKELR KYKRANQALE VYDWMNNRGE RFRLSASDAA IQLDLIGKVR GIPDAEEFFL QLPENFKDRR VYGSLLNAYV RAKSREKAEA LLNTMRDKGY
201: ALHPLPFNVM MTLYMNLREY DKVDAMVFEM KQKDIRLDIY SYNIWLSSCG SLGSVEKMEL VYQQMKSDVS IYPNWTTFST MATMYIKMGE TEKAEDALRK
301: VEARITGRNR IPYHYLLSLY GSLGNKKELY RVWHVYKSVV PSIPNLGYHA LVSSLVRMGD IEGAEKVYEE WLPVKSSYDP RIPNLLMNAY VKNDQLETAE
401: GLFDHMVEMG GKPSSSTWEI LAVGHTRKRC ISEALTCLRN AFSAEGSSNW RPKVLMLSGF FKLCEEESDV TSKEAVLELL RQSGDLEDKS YLALIDVDEN
501: RTVNNSEIDA HETDALLTQL QDDL

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g02150 [Source:UniProtKB/Swiss-Prot;Acc:Q8LPS6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.