Factsheet for TraesCS2B01G410100.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G391600.1	Wheat	plastid	95.67	96.62
TraesCS2D01G389900.1	Wheat	plastid	96.26	95.69
HORVU2Hr1G093220.7	Barley	mitochondrion	96.06	93.13
Os04t0544400-00	Rice	plastid	82.68	82.19
EES12592	Sorghum	plastid	79.33	78.25
Zm00001d002789_P001	Maize	plastid	77.95	77.19
GSMUA_AchrUn_...	Banana	cytosol	41.73	56.84
VIT_15s0021g01300.t01	Wine grape	plastid	44.29	42.69
PGSC0003DMT400080049	Potato	cytosol, plastid	42.72	39.82
Bra033215.1-P	Field mustard	mitochondrion	39.96	39.65
CDX90079	Canola	mitochondrion	39.96	39.65
AT1G02150.1	Thale cress	mitochondrion	40.75	39.5
CDY15126	Canola	cytosol, mitochondrion, plastid	39.76	39.45
Solyc01g089870.2.1	Tomato	nucleus	42.32	39.45
KRH48889	Soybean	plastid	42.32	39.38
KRH66454	Soybean	plastid	42.72	39.1
TraesCS6B01G118900.1	Wheat	cytosol	25.0	30.53
TraesCS5B01G104900.1	Wheat	mitochondrion	30.12	30.0
TraesCS6B01G119000.1	Wheat	mitochondrion	27.56	29.23
TraesCS1B01G188100.1	Wheat	mitochondrion	28.94	28.77
TraesCS2B01G583500.1	Wheat	mitochondrion	26.38	27.92
TraesCS1B01G188200.1	Wheat	mitochondrion	26.97	27.85
TraesCS6B01G119100.1	Wheat	mitochondrion	26.57	27.27
TraesCS2B01G584000.2	Wheat	mitochondrion	28.54	26.22
TraesCS6B01G391300.1	Wheat	mitochondrion	26.18	25.78
TraesCS2B01G336200.1	Wheat	mitochondrion	20.67	25.06
TraesCS7B01G189100.1	Wheat	mitochondrion	19.09	18.91
TraesCS3B01G220600.2	Wheat	mitochondrion	22.24	18.43

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003729	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0009507	GO:GO:0009536	InterPro:IPR002885	InterPro:IPR011990	InterPro:IPR019734
PFAM:PF01535	PFAM:PF13181	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF27
InterPro:Pentatricopeptide_repeat	SMART:SM00028	SUPFAM:SSF48452	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat
EnsemblPlantsGene:TraesCS2B01G410100	EnsemblPlants:TraesCS2B01G410100.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr2B:-:583674733..583677036

Molecular Weight (calculated)

58172.4 Da

IEP (calculated)

8.851

GRAVY (calculated)

-0.484

Length

508 amino acids

Sequence
(BLAST)

001: MLLHHLLPPS SRAPFRPSPR RPGCGALTVR CAPSSAASPP ASSSSSAGQQ VANVHSYGTV DFERRPALRW SSLYRRVAVG HGGRPVGRTL ADWDEGERRL
101: DKWELCRIAR ELRKFRRFNL ALEVYDWMTD RRDRFSLSSS DMAIQLDLIA KVRGVPDAEE YFEKLPDPLK DKRTYGSLLN VYAQARMKDK TEYTFEQMRK
201: KGFATDTLPF NVLMNFYVDV AEPEKVSRVT DEMKQRNVGF DVCTYNIWIK CCAAMKDADA MERVLNQMIA DESVVANWTT YTTLASMHIK LENFEKAEEC
301: LKEAEKRATG RDKKCFHFLI TLYSHLQKKE EVYRIWNWYK ATFKTIHNLG YQEVLSALVR LGDIEGAELL YEEWASKSSS FDPKTMNILL AWYSREGFVV
401: KAEQTLNRFV EKGGNPKPNT WEILATAYLK DNQFAESLSC LEKATAVKSA SKWRPRPTNV ESLLAYFKEK NDMGSVDRLM SVLRSRGCAE NEEYKSLIDT
501: YALAVAGT

Best Arabidopsis Sequence Match ( AT1G02150.1 )
(BLAST)

001: MLLQAAVQNR NVPLASSASY SRLLRCRSPV VSVAALSKKT AAIVCSISQV YGYGTVDYER RPIVQWNAIY KKISLMEKPE LGAASVLNQW EKAGRKLTKW
101: ELCRVVKELR KYKRANQALE VYDWMNNRGE RFRLSASDAA IQLDLIGKVR GIPDAEEFFL QLPENFKDRR VYGSLLNAYV RAKSREKAEA LLNTMRDKGY
201: ALHPLPFNVM MTLYMNLREY DKVDAMVFEM KQKDIRLDIY SYNIWLSSCG SLGSVEKMEL VYQQMKSDVS IYPNWTTFST MATMYIKMGE TEKAEDALRK
301: VEARITGRNR IPYHYLLSLY GSLGNKKELY RVWHVYKSVV PSIPNLGYHA LVSSLVRMGD IEGAEKVYEE WLPVKSSYDP RIPNLLMNAY VKNDQLETAE
401: GLFDHMVEMG GKPSSSTWEI LAVGHTRKRC ISEALTCLRN AFSAEGSSNW RPKVLMLSGF FKLCEEESDV TSKEAVLELL RQSGDLEDKS YLALIDVDEN
501: RTVNNSEIDA HETDALLTQL QDDL

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g02150 [Source:UniProtKB/Swiss-Prot;Acc:Q8LPS6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.