Factsheet for GSMUA_AchrUn_randomP19130_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G410100.1	Wheat	plastid	56.84	41.73
Os04t0544400-00	Rice	plastid	57.1	41.68
EES12592	Sorghum	plastid	56.57	40.97
TraesCS2A01G391600.1	Wheat	plastid	55.23	40.95
TraesCS2D01G389900.1	Wheat	plastid	56.03	40.9
HORVU2Hr1G093220.7	Barley	mitochondrion	57.1	40.65
Zm00001d002789_P001	Maize	plastid	55.5	40.35
VIT_15s0021g01300.t01	Wine grape	plastid	56.3	39.85
Bra033215.1-P	Field mustard	mitochondrion	50.13	36.52
CDX90079	Canola	mitochondrion	50.13	36.52
CDY15126	Canola	cytosol, mitochondrion, plastid	49.87	36.33
AT1G02150.1	Thale cress	mitochondrion	50.67	36.07
KRH66454	Soybean	plastid	52.28	35.14
KRH48889	Soybean	plastid	51.21	34.98
PGSC0003DMT400080049	Potato	cytosol, plastid	50.4	34.5
Solyc01g089870.2.1	Tomato	nucleus	50.4	34.5
GSMUA_Achr1P16170_001	Banana	cytosol	36.19	27.72
GSMUA_Achr1P17120_001	Banana	mitochondrion	34.32	24.62
GSMUA_Achr1P02980_001	Banana	mitochondrion	33.51	23.58
GSMUA_Achr11P...	Banana	mitochondrion	32.44	23.31
GSMUA_Achr5P20750_001	Banana	mitochondrion	32.98	22.53
GSMUA_Achr7P12830_001	Banana	mitochondrion	30.29	20.77
GSMUA_Achr10P...	Banana	cytosol	23.32	19.73
GSMUA_Achr5P27560_001	Banana	cytosol	24.66	17.93
GSMUA_Achr9P23230_001	Banana	mitochondrion	21.98	15.71
GSMUA_Achr11P...	Banana	mitochondrion	23.06	13.69
GSMUA_Achr8P21680_001	Banana	mitochondrion	22.52	13.59

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0009507	GO:GO:0009536	EnsemblPlantsGene:GSMUA_AchrUn_randomG19130_001	EnsemblPlants:GSMUA_AchrUn_randomP19130_001	EnsemblPlants:GSMUA_AchrUn_randomT19130_001	InterPro:IPR002885
InterPro:IPR011990	UniProt:M0UAH2	PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF27	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000296880E
SEG:seg	:	:	:	:	:

Description

Pentatricopeptide repeat-containing protein At1g02150 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG19130_001]

Coordinates

chrchrUn_random:+:92030354..92032076

Molecular Weight (calculated)

42544.0 Da

IEP (calculated)

4.855

GRAVY (calculated)

-0.393

Length

373 amino acids

Sequence
(BLAST)

001: MAAQGDRFTL TSSDMAIQLD LIAKVHGISH AEDHFSNLPD NLKDKRTYGA LLNVYGQAKI EDKAEAIMET MKSKGYASDA LPFNVMMTLY MNVEEHEKVG
101: MLINEMKEKN VTFDIYTYNI WITNCASMED VEEMERVVGE MTSDSNINAN WTTYTTLATM YTRLGNFEKA ESCLKDAEIR MTGRDRTPFN YLIGLYGNIG
201: KREEVYRIWN WYKSSFPSIL NLGYQSMLSS LIRLGDMDGA EVIYEEWLSS TSSYDPRICN ILMSSYVKEG LVGKAKDVLD GFLEKGGKPK PNTWEFLAEG
301: YTKEKRLSEA LLCIKAAASS EGVHRWRPRP TNITNLLELC KEKNDMDSLD MLMDLLRSRG LENLYMTPMV THD

Best Arabidopsis Sequence Match ( AT1G02150.1 )
(BLAST)

001: MLLQAAVQNR NVPLASSASY SRLLRCRSPV VSVAALSKKT AAIVCSISQV YGYGTVDYER RPIVQWNAIY KKISLMEKPE LGAASVLNQW EKAGRKLTKW
101: ELCRVVKELR KYKRANQALE VYDWMNNRGE RFRLSASDAA IQLDLIGKVR GIPDAEEFFL QLPENFKDRR VYGSLLNAYV RAKSREKAEA LLNTMRDKGY
201: ALHPLPFNVM MTLYMNLREY DKVDAMVFEM KQKDIRLDIY SYNIWLSSCG SLGSVEKMEL VYQQMKSDVS IYPNWTTFST MATMYIKMGE TEKAEDALRK
301: VEARITGRNR IPYHYLLSLY GSLGNKKELY RVWHVYKSVV PSIPNLGYHA LVSSLVRMGD IEGAEKVYEE WLPVKSSYDP RIPNLLMNAY VKNDQLETAE
401: GLFDHMVEMG GKPSSSTWEI LAVGHTRKRC ISEALTCLRN AFSAEGSSNW RPKVLMLSGF FKLCEEESDV TSKEAVLELL RQSGDLEDKS YLALIDVDEN
501: RTVNNSEIDA HETDALLTQL QDDL

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g02150 [Source:UniProtKB/Swiss-Prot;Acc:Q8LPS6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.