Factsheet for GSMUA_Achr1P16170_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os04t0320200-01	Rice	mitochondrion	71.25	66.22
VIT_00s0394g00020.t01	Wine grape	cytosol	66.12	65.85
TraesCS7D01G056000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	71.87	65.18
TraesCS7A01G061300.1	Wheat	cytosol, mitochondrion, nucleus, plastid	71.46	64.8
EER87766	Sorghum	cytosol	71.25	64.74
TraesCS4A01G428500.1	Wheat	mitochondrion	71.46	64.56
CDY24553	Canola	mitochondrion	37.99	64.24
HORVU7Hr1G011310.1	Barley	cytosol, mitochondrion, nucleus	71.46	63.16
KRH45616	Soybean	nucleus	62.83	62.45
AT1G60770.1	Thale cress	cytosol	62.01	61.51
CDX96239	Canola	mitochondrion	61.81	61.3
CDY46999	Canola	mitochondrion	61.6	61.1
CDY50357	Canola	mitochondrion	25.05	61.0
Bra027131.1-P	Field mustard	mitochondrion	61.19	60.69
CDY34141	Canola	mitochondrion	61.19	60.57
Bra031484.1-P	Field mustard	mitochondrion	60.78	60.16
Solyc11g006380.1.1	Tomato	cytosol	59.96	59.35
PGSC0003DMT400002590	Potato	cytosol	59.34	58.74
Zm00001d045492_P004	Maize	cytosol	71.05	58.05
CDY50358	Canola	cytosol	27.52	57.02
KRG99413	Soybean	cytosol, mitochondrion	41.07	56.98
CDY24554	Canola	cytosol	16.02	50.98
GSMUA_AchrUn_...	Banana	cytosol	27.72	36.19
GSMUA_Achr11P...	Banana	mitochondrion	37.37	35.07
GSMUA_Achr1P02980_001	Banana	mitochondrion	32.65	30.0
GSMUA_Achr1P17120_001	Banana	mitochondrion	31.21	29.23
GSMUA_Achr10P...	Banana	cytosol	24.44	26.98
GSMUA_Achr5P20750_001	Banana	mitochondrion	29.16	26.01
GSMUA_Achr7P12830_001	Banana	mitochondrion	27.31	24.45
GSMUA_Achr5P27560_001	Banana	cytosol	23.41	22.22
GSMUA_Achr9P23230_001	Banana	mitochondrion	22.59	21.07
GSMUA_Achr8P21680_001	Banana	mitochondrion	24.64	19.42
GSMUA_Achr11P...	Banana	mitochondrion	21.56	16.72

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	EnsemblPlantsGene:GSMUA_Achr1G16170_001
EnsemblPlants:GSMUA_Achr1P16170_001	EnsemblPlants:GSMUA_Achr1T16170_001	InterPro:IPR002885	InterPro:IPR011990	UniProt:M0S0C5	PFAM:PF01535
PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF494	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002965922	:	:	:

Description

Pentatricopeptide repeat-containing protein At1g60770 [Source:GMGC_GENE;Acc:GSMUA_Achr1G16170_001]

Coordinates

chr1:-:12102963..12107625

Molecular Weight (calculated)

55576.0 Da

IEP (calculated)

9.838

GRAVY (calculated)

-0.302

Length

487 amino acids

Sequence
(BLAST)

001: MATATGTKLV AKRSSKYLEE PLYKRLFREG TKPQSVRQQL ELFLKSRKRV YKWEVDVSIR RLRGQKRFHP ALKLSEVMAK RGMNLTLSDQ AVRLDLVAKS
101: RGIASAEEYF INLPESAKNH LTYGALLNCY CKELLTEKAE GLMEKMKELK FASSPMAYNS LMTLYAKTNQ PGKVPGIIQE MKADDVMPDC FTFNVWMRSL
201: AAMNDISGVE RVMEEMKRDG RVAADWTTYS NLASIYVDAG MFQKAEGALK ELEKRNLGQD VVAYQFLITL YGRTGNLVEV HRIWRSLKLV RPKMANVSYL
301: NMIQVLVNLK DLPGAEACFK EWESNFSVYD IRVANAMIKA YANEGMLDKA QAVKKHAKML GGRLNAKTWE IFMDYYMNKG DLKMAHWCAD RAIKKGKSLG
401: RFWVPPRETI ITLIAYFEQK KDVAGAEKFI ELLQTVEKDL GAEVFEALIR TYAAAGKRSP GMRHRLKMEH VVVGEDTEQL LESICVE

Best Arabidopsis Sequence Match ( AT1G60770.1 )
(BLAST)

001: MAMRHLSRSR DVTKRSTKKY IEEPLYNRLF KDGGTEVKVR QQLNQFLKGT KHVFKWEVGD TIKKLRNRGL YYPALKLSEV MEERGMNKTV SDQAIHLDLV
101: AKAREITAGE NYFVDLPETS KTELTYGSLL NCYCKELLTE KAEGLLNKMK ELNITPSSMS YNSLMTLYTK TGETEKVPAM IQELKAENVM PDSYTYNVWM
201: RALAATNDIS GVERVIEEMN RDGRVAPDWT TYSNMASIYV DAGLSQKAEK ALQELEMKNT QRDFTAYQFL ITLYGRLGKL TEVYRIWRSL RLAIPKTSNV
301: AYLNMIQVLV KLNDLPGAET LFKEWQANCS TYDIRIVNVL IGAYAQEGLI QKANELKEKA PRRGGKLNAK TWEIFMDYYV KSGDMARALE CMSKAVSIGK
401: GDGGKWLPSP ETVRALMSYF EQKKDVNGAE NLLEILKNGT DNIGAEIFEP LIRTYAAAGK SHPAMRRRLK MENVEVNEAT KKLLDEVSQD V

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g60770 [Source:UniProtKB/Swiss-Prot;Acc:O22714]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.