Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY50358 | Canola | cytosol | 79.08 | 51.49 |
| Bra031484.1-P | Field mustard | mitochondrion | 99.35 | 30.89 |
| CDY34141 | Canola | mitochondrion | 92.81 | 28.86 |
| CDX96239 | Canola | mitochondrion | 81.7 | 25.46 |
| CDY46999 | Canola | mitochondrion | 80.39 | 25.05 |
| AT1G60770.1 | Thale cress | cytosol | 79.74 | 24.85 |
| KRG99413 | Soybean | cytosol, mitochondrion | 49.67 | 21.65 |
| VIT_00s0394g00020.t01 | Wine grape | cytosol | 56.21 | 17.59 |
| KRH45616 | Soybean | nucleus | 55.56 | 17.35 |
| Solyc11g006380.1.1 | Tomato | cytosol | 52.94 | 16.46 |
| PGSC0003DMT400002590 | Potato | cytosol | 52.94 | 16.46 |
| GSMUA_Achr1P16170_001 | Banana | cytosol | 50.98 | 16.02 |
| Os04t0320200-01 | Rice | mitochondrion | 50.33 | 14.69 |
| TraesCS7D01G056000.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 49.67 | 14.15 |
| EER87766 | Sorghum | cytosol | 49.02 | 13.99 |
| TraesCS7A01G061300.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 49.02 | 13.97 |
| TraesCS4A01G428500.1 | Wheat | mitochondrion | 49.02 | 13.91 |
| HORVU7Hr1G011310.1 | Barley | cytosol, mitochondrion, nucleus | 49.02 | 13.61 |
| Zm00001d045492_P004 | Maize | cytosol | 50.98 | 13.09 |
| CDY15237 | Canola | mitochondrion | 33.99 | 10.14 |
| CDX89976 | Canola | mitochondrion | 33.99 | 10.1 |
| CDX91822 | Canola | mitochondrion | 30.07 | 9.2 |
| CDX90962 | Canola | mitochondrion | 30.07 | 9.18 |
| CDX91277 | Canola | mitochondrion | 24.84 | 7.32 |
| CDY35213 | Canola | cytosol | 1.96 | 7.32 |
| CDX97288 | Canola | mitochondrion | 24.18 | 7.2 |
| CDX99984 | Canola | mitochondrion | 22.22 | 7.11 |
| CDX98698 | Canola | mitochondrion | 22.22 | 6.97 |
| CDY19721 | Canola | mitochondrion | 21.57 | 6.92 |
| CDY25035 | Canola | mitochondrion, plastid | 21.57 | 6.73 |
| CDY09903 | Canola | mitochondrion | 22.22 | 6.42 |
| CDY06272 | Canola | mitochondrion | 22.22 | 6.42 |
| CDY05574 | Canola | mitochondrion | 21.57 | 6.3 |
| CDY15126 | Canola | cytosol, mitochondrion, plastid | 20.26 | 6.05 |
| CDX90079 | Canola | mitochondrion | 19.61 | 5.86 |
| CDY39654 | Canola | mitochondrion | 22.88 | 5.82 |
| CDY36566 | Canola | mitochondrion | 22.22 | 5.66 |
| CDY39781 | Canola | mitochondrion | 16.34 | 5.23 |
| CDY57695 | Canola | mitochondrion | 20.26 | 5.14 |
| CDY03299 | Canola | mitochondrion | 15.69 | 5.07 |
| CDX97686 | Canola | plastid | 20.26 | 5.0 |
| CDY30088 | Canola | plastid | 19.61 | 4.86 |
| CDX94049 | Canola | cytosol | 22.22 | 4.84 |
| CDY53325 | Canola | mitochondrion | 17.65 | 3.87 |
| CDY53324 | Canola | mitochondrion, plastid | 16.99 | 3.56 |
| CDY31943 | Canola | plastid | 10.46 | 3.3 |
| CDY05786 | Canola | plastid | 10.46 | 3.3 |
| CDY71968 | Canola | plastid | 5.88 | 3.08 |
| CDX79395 | Canola | cytosol | 20.26 | 3.02 |
| CDY66759 | Canola | cytosol | 13.73 | 2.81 |
| CDX73880 | Canola | mitochondrion | 8.5 | 2.59 |
| CDY44801 | Canola | mitochondrion | 4.58 | 1.73 |
| CDY27647 | Canola | mitochondrion | 2.61 | 0.98 |
| CDY48421 | Canola | mitochondrion | 2.61 | 0.97 |
| CDY65573 | Canola | mitochondrion | 1.96 | 0.81 |
| CDY00734 | Canola | mitochondrion | 0.0 | 0.0 |
| CDY50357 | Canola | mitochondrion | 0.0 | 0.0 |
| CDY36565 | Canola | cytosol | 0.0 | 0.0 |
| CDY35212 | Canola | mitochondrion | 0.0 | 0.0 |
| CDY27645 | Canola | mitochondrion | 0.0 | 0.0 |
| CDY24553 | Canola | mitochondrion | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY24554 | EnsemblPlantsGene:GSBRNA2T00026875001 | Gene3D:1.25.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002885 | InterPro:IPR011990 | InterPro:Pentatricopeptide_repeat | InterPro:TPR-like_helical_dom_sf | PANTHER:PTHR24015 | PANTHER:PTHR24015:SF494 |
| PFscan:PS51375 | ProteinID:CDY24554 | ProteinID:CDY24554.1 | SEG:seg | TIGRFAMs:TIGR00756 | UniParc:UPI0004EDC805 |
| UniProt:A0A078GGZ8 | MapMan:35.1 | : | : | : | : |
Description
BnaA01g22580DBnaA01g22580D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GGZ8]
Coordinates
chrLK032160:+:603062..603725
Molecular Weight (calculated)
16856.3 Da
IEP (calculated)
9.066
GRAVY (calculated)
-0.475
Length
153 amino acids
Sequence
(BLAST)
(BLAST)
001: MIGAYAKEGL IEKAKELKEK APRRGGKPNA KTWEIFMDYY VKSGATAQAL ECISKAVSIG KGDGGKWLPS QEAISTLMSQ FEVKKDVNGA ENLLEIFKKG
101: TDDSIGAEIF ESLVRTYAAA GKSHPAMRQR LKMEKVEVNE ATQKLLDALC RQE
101: TDDSIGAEIF ESLVRTYAAA GKSHPAMRQR LKMEKVEVNE ATQKLLDALC RQE
001: MAMRHLSRSR DVTKRSTKKY IEEPLYNRLF KDGGTEVKVR QQLNQFLKGT KHVFKWEVGD TIKKLRNRGL YYPALKLSEV MEERGMNKTV SDQAIHLDLV
101: AKAREITAGE NYFVDLPETS KTELTYGSLL NCYCKELLTE KAEGLLNKMK ELNITPSSMS YNSLMTLYTK TGETEKVPAM IQELKAENVM PDSYTYNVWM
201: RALAATNDIS GVERVIEEMN RDGRVAPDWT TYSNMASIYV DAGLSQKAEK ALQELEMKNT QRDFTAYQFL ITLYGRLGKL TEVYRIWRSL RLAIPKTSNV
301: AYLNMIQVLV KLNDLPGAET LFKEWQANCS TYDIRIVNVL IGAYAQEGLI QKANELKEKA PRRGGKLNAK TWEIFMDYYV KSGDMARALE CMSKAVSIGK
401: GDGGKWLPSP ETVRALMSYF EQKKDVNGAE NLLEILKNGT DNIGAEIFEP LIRTYAAAGK SHPAMRRRLK MENVEVNEAT KKLLDEVSQD V
101: AKAREITAGE NYFVDLPETS KTELTYGSLL NCYCKELLTE KAEGLLNKMK ELNITPSSMS YNSLMTLYTK TGETEKVPAM IQELKAENVM PDSYTYNVWM
201: RALAATNDIS GVERVIEEMN RDGRVAPDWT TYSNMASIYV DAGLSQKAEK ALQELEMKNT QRDFTAYQFL ITLYGRLGKL TEVYRIWRSL RLAIPKTSNV
301: AYLNMIQVLV KLNDLPGAET LFKEWQANCS TYDIRIVNVL IGAYAQEGLI QKANELKEKA PRRGGKLNAK TWEIFMDYYV KSGDMARALE CMSKAVSIGK
401: GDGGKWLPSP ETVRALMSYF EQKKDVNGAE NLLEILKNGT DNIGAEIFEP LIRTYAAAGK SHPAMRRRLK MENVEVNEAT KKLLDEVSQD V
Arabidopsis Description
Pentatricopeptide repeat-containing protein At1g60770 [Source:UniProtKB/Swiss-Prot;Acc:O22714]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.