Factsheet for PGSC0003DMT400002590

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g006380.1.1	Tomato	cytosol	96.34	96.34
VIT_00s0394g00020.t01	Wine grape	cytosol	70.53	70.96
KRH45616	Soybean	nucleus	69.31	69.59
CDY24553	Canola	mitochondrion	40.65	69.44
CDY50357	Canola	mitochondrion	27.44	67.5
AT1G60770.1	Thale cress	cytosol	65.45	65.58
Bra031484.1-P	Field mustard	mitochondrion	64.02	64.02
CDY34141	Canola	mitochondrion	64.02	64.02
CDY46999	Canola	mitochondrion	63.82	63.95
KRG99413	Soybean	cytosol, mitochondrion	45.53	63.82
CDX96239	Canola	mitochondrion	63.62	63.75
Bra027131.1-P	Field mustard	mitochondrion	63.21	63.34
GSMUA_Achr1P16170_001	Banana	cytosol	58.74	59.34
CDY50358	Canola	cytosol	26.83	56.17
Os04t0320200-01	Rice	mitochondrion	58.33	54.77
EER87766	Sorghum	cytosol	58.54	53.73
TraesCS7D01G056000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	58.54	53.63
TraesCS7A01G061300.1	Wheat	cytosol, mitochondrion, nucleus, plastid	58.54	53.63
TraesCS4A01G428500.1	Wheat	mitochondrion	58.74	53.62
CDY24554	Canola	cytosol	16.46	52.94
HORVU7Hr1G011310.1	Barley	cytosol, mitochondrion, nucleus	58.54	52.27
Zm00001d045492_P004	Maize	cytosol	57.52	47.48
PGSC0003DMT400023279	Potato	mitochondrion	39.23	38.99
PGSC0003DMT400031020	Potato	cytosol	9.15	37.82
PGSC0003DMT400007271	Potato	mitochondrion	31.71	32.3
PGSC0003DMT400058755	Potato	cytosol	25.41	31.65
PGSC0003DMT400047256	Potato	extracellular	19.92	30.34
PGSC0003DMT400004477	Potato	plastid	29.47	30.15
PGSC0003DMT400076417	Potato	cytosol, mitochondrion	29.88	29.94
PGSC0003DMT400032340	Potato	mitochondrion	27.03	27.48
PGSC0003DMT400076352	Potato	cytosol, mitochondrion	26.63	27.41
PGSC0003DMT400077284	Potato	mitochondrion	29.07	27.29
PGSC0003DMT400080049	Potato	cytosol, plastid	30.08	27.16
PGSC0003DMT400011461	Potato	mitochondrion	21.75	26.75
PGSC0003DMT400012266	Potato	cytosol, mitochondrion, plastid	28.46	26.72
PGSC0003DMT400047255	Potato	cytosol, mitochondrion, plastid	27.03	26.71
PGSC0003DMT400031016	Potato	cytosol	15.65	25.33
PGSC0003DMT400069375	Potato	cytosol	22.36	23.21
PGSC0003DMT400092266	Potato	mitochondrion	8.33	22.16
PGSC0003DMT400022632	Potato	mitochondrion	24.19	19.07
PGSC0003DMT400021596	Potato	mitochondrion	22.15	17.78

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:102596005	MapMan:35.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	UniProt:M0ZKB9	PFAM:PF01535	PFAM:PF13041
PFAM:PF13812	EnsemblPlantsGene:PGSC0003DMG400000993	PGSC:PGSC0003DMG400000993	EnsemblPlants:PGSC0003DMT400002590	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF494	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI00029646D2
RefSeq:XP_006350932.1	SEG:seg	:	:	:	:

Description

Pentatricopeptide repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400000993]

Coordinates

chr11:-:6251699..6254854

Molecular Weight (calculated)

56072.9 Da

IEP (calculated)

9.367

GRAVY (calculated)

-0.397

Length

492 amino acids

Sequence
(BLAST)

001: MASFMQNLAR TKNIGKRSKK KYLEDALYKN LFKEGGEENH VRKNLNQFLK SHKSAFKWEV GKSLKVLRQR KLYAPALKLS ETMEKRGMNK TVSDQAIHID
101: IVAKSKGIEA GESYFLNLPE TSKDLLTYCA LLNCYCKELM TEKAEALMEK VKELNLSLSS MPYNSLMTLY TKTGHPEKIP AIIQEMKAND VMPDCYTYNV
201: WMRALSSVND ISGVERVIDE MKRDGRVAED WTTYSNLASI YADAGLTDKA VKALKELEKK NACRNITAYQ FLITLYGRVG NLLEVYRVWR SLRLAFPRTA
301: NISYLNMIQV LVNLNDIPGA EKCFKEWESG CPTYDIRIAN VLIGVYTKQS SLEKAEQLKE RARRSGAKPN AKTWEIFMDY YLQNGDIKSA IDCVDKAVSI
401: GRGDGSKWFP SSAIVTKFMS HFEQNKDVAG AEHFVEILKK AKDELGVDIF ESLLRTYIAS EKTSPIMRRR IKMESIELTD EGKRLLDAVS VE

Best Arabidopsis Sequence Match ( AT1G60770.1 )
(BLAST)

001: MAMRHLSRSR DVTKRSTKKY IEEPLYNRLF KDGGTEVKVR QQLNQFLKGT KHVFKWEVGD TIKKLRNRGL YYPALKLSEV MEERGMNKTV SDQAIHLDLV
101: AKAREITAGE NYFVDLPETS KTELTYGSLL NCYCKELLTE KAEGLLNKMK ELNITPSSMS YNSLMTLYTK TGETEKVPAM IQELKAENVM PDSYTYNVWM
201: RALAATNDIS GVERVIEEMN RDGRVAPDWT TYSNMASIYV DAGLSQKAEK ALQELEMKNT QRDFTAYQFL ITLYGRLGKL TEVYRIWRSL RLAIPKTSNV
301: AYLNMIQVLV KLNDLPGAET LFKEWQANCS TYDIRIVNVL IGAYAQEGLI QKANELKEKA PRRGGKLNAK TWEIFMDYYV KSGDMARALE CMSKAVSIGK
401: GDGGKWLPSP ETVRALMSYF EQKKDVNGAE NLLEILKNGT DNIGAEIFEP LIRTYAAAGK SHPAMRRRLK MENVEVNEAT KKLLDEVSQD V

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g60770 [Source:UniProtKB/Swiss-Prot;Acc:O22714]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.