Factsheet for TraesCS4A01G428500.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 3
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
MultiLoc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G056000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	97.59	97.95
TraesCS7A01G061300.1	Wheat	cytosol, mitochondrion, nucleus, plastid	97.4	97.77
HORVU7Hr1G011310.1	Barley	cytosol, mitochondrion, nucleus	96.29	94.19
Os04t0320200-01	Rice	mitochondrion	83.12	85.5
EER87766	Sorghum	cytosol	82.0	82.46
Zm00001d045492_P004	Maize	cytosol	81.08	73.32
GSMUA_Achr1P16170_001	Banana	cytosol	64.56	71.46
CDY24553	Canola	mitochondrion	35.06	65.62
VIT_00s0394g00020.t01	Wine grape	cytosol	56.03	61.76
KRH45616	Soybean	nucleus	55.47	61.02
CDY50357	Canola	mitochondrion	22.45	60.5
AT1G60770.1	Thale cress	cytosol	55.1	60.49
CDX96239	Canola	mitochondrion	55.1	60.49
CDY46999	Canola	mitochondrion	55.1	60.49
Bra027131.1-P	Field mustard	mitochondrion	54.55	59.88
Bra031484.1-P	Field mustard	mitochondrion	54.17	59.35
CDY34141	Canola	mitochondrion	54.17	59.35
Solyc11g006380.1.1	Tomato	cytosol	53.99	59.15
PGSC0003DMT400002590	Potato	cytosol	53.62	58.74
KRG99413	Soybean	cytosol, mitochondrion	35.81	54.99
CDY50358	Canola	cytosol	22.82	52.34
CDY24554	Canola	cytosol	13.91	49.02
TraesCS6A01G091200.2	Wheat	cytosol	23.38	34.52
TraesCS6A01G091100.1	Wheat	mitochondrion	31.54	33.53
TraesCS6A01G090900.1	Wheat	mitochondrion	28.57	32.15
TraesCS2A01G552700.1	Wheat	mitochondrion	32.65	31.94
TraesCS6A01G091000.1	Wheat	mitochondrion	30.06	31.76
TraesCS6A01G090800.2	Wheat	mitochondrion	28.2	31.54
TraesCS2A01G391600.1	Wheat	plastid	28.2	30.22
TraesCS1A01G168800.1	Wheat	mitochondrion	27.46	28.96
TraesCS2A01G552100.1	Wheat	mitochondrion	28.94	28.36
TraesCS5A01G099700.1	Wheat	mitochondrion	25.6	27.06
TraesCS6A01G358600.1	Wheat	mitochondrion	24.86	25.92
TraesCS2A01G318100.1	Wheat	mitochondrion	18.74	24.11
TraesCS1A01G168700.1	Wheat	mitochondrion	24.49	22.6
TraesCS3A01G191200.1	Wheat	mitochondrion	22.82	20.1
TraesCS7A01G296400.1	Wheat	mitochondrion	18.74	19.69

Protein Annotations

EnsemblPlants:TraesCS4A01G428500.1	EnsemblPlantsGene:TraesCS4A01G428500	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	ncoils:Coil	PANTHER:PTHR24015
PANTHER:PTHR24015:SF494	PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	SEG:seg	SUPFAM:SSF48452
TIGRFAMs:TIGR00756	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr4A:-:699790453..699793645

Molecular Weight (calculated)

61703.4 Da

IEP (calculated)

9.443

GRAVY (calculated)

-0.535

Length

539 amino acids

Sequence
(BLAST)

001: MATATATRAK DLARRSPKKY VEEALYRRLF RRGSTPQAVR EEVDGFLGSR KRAFKWEVAV CVRRLRRQEL YRPALKLTEV MTRRGMNPTV GDQAIRLDLV
101: AKSRGIAAAE KYFMDLPETS KTHLTYGALL NCYCKELMTE KAESLMEKMK ELNFAFTAMS YNSLMTLYTK VNKPEMVPSI IQDMKADDVL PDVYTYNVWM
201: RSLAARQDIS GVERVIEEMT RDGRVAPDWT TYSNLASIYV DAGLSEKAET ALKELEKRNT SNDLEAYQFL ITLYGRTQNL VEVHRVWRSL KRNNPRKANM
301: SYLNMIQVLA NLKDLPAAEA CFKEWEARFI RPPKTKATDA VTTETSKLEE EASTEASNND SDVKEAEDKE TEELDLKRPK YDIRVANALM KAYVTEGMLD
401: KAIALKKRAK MRGGRLNAKT WEIFMEHYLK VGDLKNAHWC ADRAIKKGHS SGRIWVPPHD VTETLMGYFE KKKDVDGAES FVEVLKKVQK DLGTVVFEPL
501: VRTYAAAGKK FPGMRHRLKI ENVELSEETD KLVDSICVD

Best Arabidopsis Sequence Match ( AT1G60770.1 )
(BLAST)

001: MAMRHLSRSR DVTKRSTKKY IEEPLYNRLF KDGGTEVKVR QQLNQFLKGT KHVFKWEVGD TIKKLRNRGL YYPALKLSEV MEERGMNKTV SDQAIHLDLV
101: AKAREITAGE NYFVDLPETS KTELTYGSLL NCYCKELLTE KAEGLLNKMK ELNITPSSMS YNSLMTLYTK TGETEKVPAM IQELKAENVM PDSYTYNVWM
201: RALAATNDIS GVERVIEEMN RDGRVAPDWT TYSNMASIYV DAGLSQKAEK ALQELEMKNT QRDFTAYQFL ITLYGRLGKL TEVYRIWRSL RLAIPKTSNV
301: AYLNMIQVLV KLNDLPGAET LFKEWQANCS TYDIRIVNVL IGAYAQEGLI QKANELKEKA PRRGGKLNAK TWEIFMDYYV KSGDMARALE CMSKAVSIGK
401: GDGGKWLPSP ETVRALMSYF EQKKDVNGAE NLLEILKNGT DNIGAEIFEP LIRTYAAAGK SHPAMRRRLK MENVEVNEAT KKLLDEVSQD V

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g60770 [Source:UniProtKB/Swiss-Prot;Acc:O22714]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.