Factsheet for TraesCS2A01G552100.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G553100.1	Wheat	mitochondrion	94.18	95.05
TraesCS2B01G583500.1	Wheat	mitochondrion	78.0	89.38
TraesCS6A01G091100.1	Wheat	mitochondrion	52.55	57.0
TraesCS6A01G090900.1	Wheat	mitochondrion	49.64	56.99
Os01t0301700-01	Rice	mitochondrion	52.0	56.75
TraesCS6A01G090800.2	Wheat	mitochondrion	49.45	56.43
TraesCS6A01G091200.2	Wheat	cytosol	37.09	55.89
TraesCS6A01G091000.1	Wheat	mitochondrion	51.27	55.29
VIT_07s0005g01630.t01	Wine grape	mitochondrion	32.55	37.92
PGSC0003DMT400023279	Potato	mitochondrion	32.0	35.56
TraesCS2A01G552700.1	Wheat	mitochondrion	35.45	35.39
AT4G01990.1	Thale cress	mitochondrion	31.64	34.66
Bra033321.1-P	Field mustard	mitochondrion	32.36	34.56
CDY15237	Canola	mitochondrion	32.0	34.31
CDX89976	Canola	mitochondrion	32.0	34.17
CDX91822	Canola	mitochondrion	30.73	33.8
KRH69203	Soybean	cytosol	23.82	33.68
CDX90962	Canola	mitochondrion	30.55	33.53
KRH31780	Soybean	mitochondrion	28.91	33.4
Bra000902.1-P	Field mustard	mitochondrion	30.36	33.33
VIT_14s0060g01120.t01	Wine grape	cytosol, mitochondrion	30.0	33.13
Solyc01g079320.2.1	Tomato	cytosol, mitochondrion	29.09	32.99
Solyc01g100580.2.1	Tomato	mitochondrion	28.73	32.78
PGSC0003DMT400007271	Potato	mitochondrion	28.18	32.09
AT1G02370.1	Thale cress	mitochondrion	30.0	30.73
TraesCS1A01G168800.1	Wheat	mitochondrion	28.55	30.72
TraesCS7A01G061300.1	Wheat	cytosol, mitochondrion, nucleus, plastid	28.55	29.24
TraesCS4A01G428500.1	Wheat	mitochondrion	28.36	28.94
TraesCS2A01G391600.1	Wheat	plastid	25.09	27.44
TraesCS5A01G099700.1	Wheat	mitochondrion	25.09	27.06
TraesCS1A01G168700.1	Wheat	mitochondrion	26.36	24.83
TraesCS6A01G358600.1	Wheat	mitochondrion	22.0	23.4
TraesCS2A01G318100.1	Wheat	mitochondrion	17.82	23.39
TraesCS3A01G191200.1	Wheat	mitochondrion	18.91	16.99
TraesCS7A01G296400.1	Wheat	mitochondrion	14.36	15.4

Protein Annotations

EnsemblPlants:TraesCS2A01G552100.1	EnsemblPlantsGene:TraesCS2A01G552100	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF942
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	SEG:seg	SUPFAM:SSF48452	TIGRFAMs:TIGR00756
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr2A:+:758417234..758421386

Molecular Weight (calculated)

62547.2 Da

IEP (calculated)

8.296

GRAVY (calculated)

-0.396

Length

550 amino acids

Sequence
(BLAST)

001: MARAALLRSF PPPRVRPFSS PAAAPLAPPG GGSSAPRAAQ GRESGGAVGF RTELPEFSPE SPMLRAAAEA ALRRVSPAPA RSVHAQFRRG PELRVAWVPL
101: YRRLSKLPPA APLGCVAAEL DRWLRERQPL CEHQLLFYVR KLRNFRQHRR ALELIDWMEA RGAYLLPGDH ALRLDLVCKV NGLEAAEEYF SSLPDMHKSV
201: KTYSSLLNCY AEHKPEKGLE LYEKMRTMNI VPNTLVYKNL MSLYLKAGQP EKVLKTFEEM RGNGIQTDNF TYCILTESHI MVNGLESTKK FLEDLEKSIP
301: VHWSLYTVLA NNYNKVGQFD KAELALKKAE EVMDKGEMFA WHNLLSLYAS SGNLSEVKRL WVSLKSELKI CSNRSYLVML SSLKKLDDFD SMQQVFQEWE
401: FTQQSFDMRI PNVMIRAYLA KDMTDEAEAL RQAAMAQGRS DPMTFYIFAE SYLEKSRTDA ALQVWRDAEK IVNTPNWAPR PEFVKRFLKH FEEAKDVDGM
501: ESFCACLEKL ECLDADARDA LSRTYVAAGR TNPSSIIHRT EEDQVETRPG

Best Arabidopsis Sequence Match ( AT1G02150.1 )
(BLAST)

001: MLLQAAVQNR NVPLASSASY SRLLRCRSPV VSVAALSKKT AAIVCSISQV YGYGTVDYER RPIVQWNAIY KKISLMEKPE LGAASVLNQW EKAGRKLTKW
101: ELCRVVKELR KYKRANQALE VYDWMNNRGE RFRLSASDAA IQLDLIGKVR GIPDAEEFFL QLPENFKDRR VYGSLLNAYV RAKSREKAEA LLNTMRDKGY
201: ALHPLPFNVM MTLYMNLREY DKVDAMVFEM KQKDIRLDIY SYNIWLSSCG SLGSVEKMEL VYQQMKSDVS IYPNWTTFST MATMYIKMGE TEKAEDALRK
301: VEARITGRNR IPYHYLLSLY GSLGNKKELY RVWHVYKSVV PSIPNLGYHA LVSSLVRMGD IEGAEKVYEE WLPVKSSYDP RIPNLLMNAY VKNDQLETAE
401: GLFDHMVEMG GKPSSSTWEI LAVGHTRKRC ISEALTCLRN AFSAEGSSNW RPKVLMLSGF FKLCEEESDV TSKEAVLELL RQSGDLEDKS YLALIDVDEN
501: RTVNNSEIDA HETDALLTQL QDDL

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g02150 [Source:UniProtKB/Swiss-Prot;Acc:Q8LPS6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.