Factsheet for AT4G01990.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX91822	Canola	mitochondrion	76.49	76.8
CDX90962	Canola	mitochondrion	74.7	74.85
Bra000902.1-P	Field mustard	mitochondrion	74.3	74.45
AT1G02370.1	Thale cress	mitochondrion	64.54	60.34
VIT_07s0005g01630.t01	Wine grape	mitochondrion	43.63	46.4
PGSC0003DMT400023279	Potato	mitochondrion	44.62	45.25
Solyc01g079320.2.1	Tomato	cytosol, mitochondrion	42.63	44.12
KRH31780	Soybean	mitochondrion	40.04	42.23
KRH69203	Soybean	cytosol	32.67	42.16
GSMUA_Achr11P...	Banana	mitochondrion	40.44	39.11
Zm00001d009122_P001	Maize	mitochondrion	36.85	35.92
Os01t0301000-01	Rice	mitochondrion	36.45	35.06
EES02848	Sorghum	mitochondrion	36.85	34.91
TraesCS6B01G118900.1	Wheat	cytosol	28.88	34.86
TraesCS2B01G583500.1	Wheat	mitochondrion	33.27	34.79
TraesCS6D01G079300.1	Wheat	mitochondrion	34.86	34.38
TraesCS6B01G119100.1	Wheat	mitochondrion	33.86	34.34
TraesCS2A01G552700.1	Wheat	mitochondrion	37.65	34.3
TraesCS6A01G091100.1	Wheat	mitochondrion	34.46	34.12
TraesCS2D01G553300.1	Wheat	mitochondrion	38.05	34.11
TraesCS2B01G584000.2	Wheat	mitochondrion	37.25	33.82
HORVU2Hr1G120330.4	Barley	endoplasmic reticulum, extracellular	33.67	33.73
TraesCS6A01G091000.1	Wheat	mitochondrion	34.26	33.73
AT1G60770.1	Thale cress	cytosol	32.87	33.6
TraesCS6D01G079200.1	Wheat	plastid	35.86	33.27
TraesCS6D01G079100.1	Wheat	mitochondrion	31.08	32.57
TraesCS6A01G091200.2	Wheat	cytosol	23.51	32.33
TraesCS6A01G090800.2	Wheat	mitochondrion	30.88	32.16
Os01t0301700-01	Rice	mitochondrion	32.27	32.14
TraesCS6B01G119000.1	Wheat	mitochondrion	30.48	31.94
TraesCS2A01G552100.1	Wheat	mitochondrion	34.66	31.64
TraesCS6A01G090900.1	Wheat	mitochondrion	30.08	31.52
TraesCS2D01G553100.1	Wheat	mitochondrion	34.06	31.38
HORVU6Hr1G016390.10	Barley	plastid	33.67	30.4
Os01t0301500-01	Rice	cytosol, mitochondrion	29.08	30.17
AT4G21705.1	Thale cress	mitochondrion	29.48	30.08
HORVU6Hr1G016360.7	Barley	mitochondrion	29.88	30.0
AT1G02150.1	Thale cress	mitochondrion	30.48	29.2
TraesCS6D01G079400.1	Wheat	plastid	25.9	28.82
AT4G02820.1	Thale cress	mitochondrion	27.89	26.32
AT2G20710.1	Thale cress	mitochondrion	24.7	25.31
AT5G27460.1	Thale cress	cytosol, mitochondrion, plastid	24.7	25.25
AT1G28020.1	Thale cress	cytosol, plastid	23.11	23.48
AT5G09450.1	Thale cress	mitochondrion	18.53	22.74
AT2G20720.1	Thale cress	cytosol	12.15	20.4
AT1G07590.1	Thale cress	mitochondrion	20.52	19.29
AT1G43010.1	Thale cress	mitochondrion	9.56	18.68
AT3G11380.1	Thale cress	mitochondrion	19.72	18.3
AT1G28000.1	Thale cress	mitochondrion	13.74	17.78
AT1G80270.2	Thale cress	mitochondrion	19.32	16.28
AT1G15480.1	Thale cress	mitochondrion	19.12	16.16
AT3G11350.1	Thale cress	mitochondrion	11.16	15.6
AT3G15590.2	Thale cress	cytosol, mitochondrion	17.93	14.75

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EntrezGene:828172	UniProt:A0A178UY97	ProteinID:AAD22661.1	ProteinID:AEE82108.1
ArrayExpress:AT4G01990	EnsemblPlantsGene:AT4G01990	RefSeq:AT4G01990	TAIR:AT4G01990	RefSeq:AT4G01990-TAIR-G	EnsemblPlants:AT4G01990.1
TAIR:AT4G01990.1	EMBL:AY039582	EMBL:AY059165	Unigene:At.3857	ProteinID:CAB80692.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787
GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	RefSeq:NP_567220.1	ProteinID:OAO98074.1
PFAM:PF01535	PO:PO:0000005	PO:PO:0000013	PO:PO:0000037	PO:PO:0000230	PO:PO:0000293
PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007057
PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123
PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009
PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032
PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100
PO:PO:0020137	PO:PO:0025022	PANTHER:PTHR24015	PANTHER:PTHR24015:SF504	InterPro:Pentatricopeptide_repeat	UniProt:Q93WC5
SUPFAM:SSF48452	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000009CB51	:	:

Description

Pentatricopeptide repeat-containing protein At4g01990, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q93WC5]

Coordinates

chr4:-:871126..872920

Molecular Weight (calculated)

56944.6 Da

IEP (calculated)

7.011

GRAVY (calculated)

-0.314

Length

502 amino acids

Sequence
(BLAST)

001: MMHSVSRLAR RFCATLATAT AEISGEAAAS VPTKAKKHRS IYKKLSSLGT RGGGKMEETL NQFVMEGVPV KKHDLIRYAK DLRKFRQPQR ALEIFEWMER
101: KEIAFTGSDH AIRLNLIAKS KGLEAAETYF NSLDDSIKNQ STYGSLLNCY CVEKEEVKAK AHFENMVDLN HVSNSLPFNN LMAMYMGLGQ PEKVPALVVA
201: MKEKSITPCD ITYSMWIQSC GSLKDLDGVE KVLDEMKAEG EGIFSWNTFA NLAAIYIKVG LYGKAEEALK SLENNMNPDV RDCYHFLINL YTGIANASEV
301: YRVWDLLKKR YPNVNNSSYL TMLRALSKLD DIDGVKKVFA EWESTCWTYD MRMANVAISS YLKQNMYEEA EAVFNGAMKK CKGQFSKARQ LLMMHLLKND
401: QADLALKHFE AAVLDQDKNW TWSSELISSF FLHFEEAKDV DGAEEFCKTL TKWSPLSSET YTLLMKTYLA AGKACPDMKK RLEEQGILVD EEQECLLSKI
501: CP

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.