Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra036496.1-P | Field mustard | plastid | 58.86 | 36.29 |
| CDY31943 | Canola | plastid | 58.86 | 36.29 |
| CDY05786 | Canola | plastid | 58.19 | 35.88 |
| AT2G20710.1 | Thale cress | mitochondrion | 31.1 | 18.98 |
| Solyc07g054100.1.1 | Tomato | cytosol | 20.4 | 18.89 |
| PGSC0003DMT400047256 | Potato | extracellular | 20.4 | 18.89 |
| VIT_12s0028g03870.t01 | Wine grape | cytosol, mitochondrion | 23.75 | 14.23 |
| Solyc07g054090.2.1 | Tomato | cytosol, mitochondrion, plastid | 22.07 | 13.39 |
| PGSC0003DMT400047255 | Potato | cytosol, mitochondrion, plastid | 22.07 | 13.25 |
| KRH22399 | Soybean | cytosol | 21.07 | 13.24 |
| AT5G27460.1 | Thale cress | cytosol, mitochondrion, plastid | 20.74 | 12.63 |
| KRH26940 | Soybean | cytosol | 20.74 | 12.5 |
| AT4G01990.1 | Thale cress | mitochondrion | 20.4 | 12.15 |
| AT4G21705.1 | Thale cress | mitochondrion | 19.4 | 11.79 |
| OQU91552 | Sorghum | mitochondrion | 20.07 | 11.76 |
| GSMUA_Achr5P20750_001 | Banana | mitochondrion | 21.07 | 11.54 |
| Os10t0501300-01 | Rice | mitochondrion | 19.73 | 11.5 |
| AT1G28020.1 | Thale cress | cytosol, plastid | 18.73 | 11.34 |
| AT1G02150.1 | Thale cress | mitochondrion | 19.73 | 11.26 |
| AT1G02370.1 | Thale cress | mitochondrion | 20.07 | 11.17 |
| TraesCS1D01G166700.1 | Wheat | mitochondrion | 18.39 | 11.11 |
| AT4G02820.1 | Thale cress | mitochondrion | 19.06 | 10.71 |
| TraesCS1B01G188200.1 | Wheat | mitochondrion | 17.39 | 10.57 |
| Zm00001d032543_P001 | Maize | mitochondrion | 18.06 | 10.44 |
| AT1G60770.1 | Thale cress | cytosol | 17.06 | 10.39 |
| Os10t0501200-00 | Rice | mitochondrion | 20.07 | 9.58 |
| AT1G28000.1 | Thale cress | mitochondrion | 12.04 | 9.28 |
| AT3G11350.1 | Thale cress | mitochondrion | 10.7 | 8.91 |
| AT3G11380.1 | Thale cress | mitochondrion | 15.72 | 8.69 |
| Os10t0501000-01 | Rice | cytosol | 12.71 | 8.43 |
| TraesCS1A01G168700.1 | Wheat | mitochondrion | 16.39 | 8.39 |
| AT3G15590.2 | Thale cress | cytosol, mitochondrion | 16.05 | 7.87 |
| AT1G07590.1 | Thale cress | mitochondrion | 14.05 | 7.87 |
| AT1G43010.1 | Thale cress | mitochondrion | 6.69 | 7.78 |
| AT1G15480.1 | Thale cress | mitochondrion | 15.38 | 7.74 |
| AT1G80270.2 | Thale cress | mitochondrion | 14.38 | 7.21 |
| AT5G09450.1 | Thale cress | mitochondrion | 9.03 | 6.6 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:35.1 | EntrezGene:816600 | ProteinID:AEC07061.1 | ArrayExpress:AT2G20720 | EnsemblPlantsGene:AT2G20720 |
| RefSeq:AT2G20720 | TAIR:AT2G20720 | RefSeq:AT2G20720-TAIR-G | EnsemblPlants:AT2G20720.1 | TAIR:AT2G20720.1 | EMBL:AY140043 |
| Unigene:At.63478 | EMBL:BT006328 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 |
| GO:GO:0004518 | GO:GO:0004519 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009451 | GO:GO:0009987 |
| GO:GO:0016740 | GO:GO:0016747 | GO:GO:0016787 | GO:GO:0043231 | GO:GO:0090305 | InterPro:IPR002885 |
| InterPro:IPR011990 | RefSeq:NP_179664.2 | PO:PO:0000293 | PO:PO:0001078 | PO:PO:0009010 | PANTHER:PTHR24015 |
| PANTHER:PTHR24015:SF269 | InterPro:Pentatricopeptide_repeat | UniProt:Q8L705 | TIGRFAMs:TIGR00756 | InterPro:TPR-like_helical_dom_sf | UniParc:UPI00000A3ACB |
| SEG:seg | : | : | : | : | : |
Description
At2g20720 [Source:UniProtKB/TrEMBL;Acc:Q8L705]
Coordinates
chr2:-:8927822..8930120
Molecular Weight (calculated)
34488.5 Da
IEP (calculated)
4.987
GRAVY (calculated)
-0.436
Length
299 amino acids
Sequence
(BLAST)
(BLAST)
001: MLCLYHQAED HDMVVKLLGE MDEKKMQPQG LCFVKLLTSY SMASVVDVQG VEKFLSKWEV MIQDKWTTFY FPGLVYIRAG FMEKGLALLR RSETFVDDGC
101: REIIYGCLMT VYCNENLTED VYRLWNLAKD YGISFDSSRC SDIVKAFTKK GDLDGVMEEW NECPNLDLMD FGLQHRCVKE EAEKVVDMLG KKESKWESLA
201: HKVNTLVEDE DAKEEERRKR VAEAMEGRLH DRWNPKNSMA LSAFACVQYV EGRRDMESTA DILRLLNKRE QVSHAMDKNR LSLKMVEAMR GGGYVGGDD
101: REIIYGCLMT VYCNENLTED VYRLWNLAKD YGISFDSSRC SDIVKAFTKK GDLDGVMEEW NECPNLDLMD FGLQHRCVKE EAEKVVDMLG KKESKWESLA
201: HKVNTLVEDE DAKEEERRKR VAEAMEGRLH DRWNPKNSMA LSAFACVQYV EGRRDMESTA DILRLLNKRE QVSHAMDKNR LSLKMVEAMR GGGYVGGDD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.